Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p01f
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   3.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.4  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.4  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 336 WYRRT-VPILTY*RYKSTPPAMLVAATTNAMRNIHTSIVAERFLMM 202
           WY    VP+  Y  + +     +V +T N +  ++T I+ ERF ++
Sbjct: 19  WYTVCLVPLNPYQFFLAVQYPRIVVSTFNIVFYMYTLILEERFKLI 64


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 79  KHTLIHYDFNFNKY 38
           KHT  HY  N N Y
Sbjct: 299 KHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 79  KHTLIHYDFNFNKY 38
           KHT  HY  N N Y
Sbjct: 247 KHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 79  KHTLIHYDFNFNKY 38
           KHT  HY  N N Y
Sbjct: 430 KHTQQHYQMNQNMY 443


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 437 IVSTLDEAATDQLITALR 490
           +V+T+DEAA+D   T +R
Sbjct: 640 LVATIDEAASDVHQTHMR 657


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 437 IVSTLDEAATDQLITALR 490
           +V+T+DEAA+D   T +R
Sbjct: 640 LVATIDEAASDVHQTHMR 657


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 437 IVSTLDEAATDQLITALR 490
           +V+T+DEAA+D   T +R
Sbjct: 640 LVATIDEAASDVHQTHMR 657


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 437 IVSTLDEAATDQLITALR 490
           +V+T+DEAA+D   T +R
Sbjct: 640 LVATIDEAASDVHQTHMR 657


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 560 IHDFQTNTTGIIDSDRCFTMEL 625
           IH  +TN   IID    F++++
Sbjct: 667 IHKIETNDHEIIDKIEMFSLQI 688



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 560  IHDFQTNTTGIIDSDRCFTMEL 625
            IH  +TN   IID    F++++
Sbjct: 1045 IHKIETNEHEIIDKIEMFSLQI 1066


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 560 IHDFQTNTTGIIDSDRCFTMEL 625
           IH  +TN   IID    F++++
Sbjct: 326 IHKIETNEHEIIDKIEMFSLQI 347


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,162
Number of Sequences: 336
Number of extensions: 3263
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)