Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p01f
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   3.9  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   6.8  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   6.8  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   6.8  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   9.0  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = -2

Query: 217 TLPHDVRALDVVHIDQLIFT*LVGNGLRLVSVETGL-------RENGHDKIIIKHTLIHY 59
           TLPH V   D+V I + +F  +  +  R + V+ GL          G      +   I Y
Sbjct: 527 TLPHSVSESDIVDIIEEVFNSVEAS--RYIIVQYGLFALTKLSARLGSSSTASRIDKIIY 584

Query: 58  DFNFNKYSVLQKRSLE 11
            +  NK + +Q+RS+E
Sbjct: 585 SYKRNKNTEVQQRSVE 600


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 398 TMP-LRWSNEPDVQIVSTLDEAATDQLITALRE 493
           TMP +    +P+VQ V  +DEA  +Q I + +E
Sbjct: 191 TMPQVEGKEDPNVQAVYEMDEAKNEQTIISEQE 223


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 238 YVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPGLLYH 351
           Y PHGV+ G +      A + ++R   H +  P L  H
Sbjct: 217 YAPHGVNMGTNMGANMGANMNAIRGGLHSSISPNLGDH 254


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +2

Query: 197 PYIMRKRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCTIPISTRDSQ 376
           P+   K +     C+F ++ V+AATS+ G      +YV I ++   +   TIP  TR+++
Sbjct: 165 PFTYGKFAPDSKECLFGVSGVIAATSLKGITSTKNRYV-IRSLNVDETGKTIPNITRENR 223


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/56 (17%), Positives = 25/56 (44%)
 Frame = +2

Query: 401 MPLRWSNEPDVQIVSTLDEAATDQLITALREELDIGETVEKISVIDNGRRIHFIHD 568
           + LR   E  +  ++ + +       T ++E +D+G  +  +  +    +  F+HD
Sbjct: 312 LELRSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHD 367


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 250 GVSGGRDQHCRWRALVPSVRENRHRTTIP 336
           G SGG D  C+W  L    R   H+   P
Sbjct: 73  GASGGADTECKWAELNMIERRCPHQVGKP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,502
Number of Sequences: 5004
Number of extensions: 50556
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)