Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p01f
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148...    29   3.0  
11_01_0790 + 6617659-6619593,6619696-6620106                           27   9.2  
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949...    27   9.2  
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184     27   9.2  

>06_01_0191 +
           1478267-1478929,1480579-1480789,1482625-1482925,
           1483217-1483612,1483993-1484070,1484166-1484373
          Length = 618

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 214 LPHDVRALDVVHIDQLIFT*LVGNGLRLVSVETGLRENGH 95
           LP+  RA D+ H  + +      NGL ++ V+  LR  G+
Sbjct: 269 LPYPARAFDMAHCSRCLIPWSKYNGLYMIEVDRVLRPGGY 308


>11_01_0790 + 6617659-6619593,6619696-6620106
          Length = 781

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 169 ADRYAQHRGPLHHEEAFRYYAGVYVPHGVSG 261
           ADRYA  +        FRY+ GV  P G+SG
Sbjct: 556 ADRYADEK-----RTEFRYFIGVEAPKGLSG 581


>04_03_0539 +
           16892822-16892900,16894004-16894107,16894718-16894917,
           16896078-16896178,16897546-16897735,16898377-16898458,
           16899374-16899501,16899846-16900026
          Length = 354

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 202 VRALDVVHIDQLIFT*LVGNGLRLVSVE---TGLRENGHDKI-IIKHTLIHYDFNFNKYS 35
           VRA D +  ++ + T +VGNGL  V  E    G      +KI  +   + H +F    Y 
Sbjct: 46  VRAPDAIAAEERVLTEVVGNGLFDVLREQYGAGFHSFIKEKIYALPGDVTHENFGLESYD 105

Query: 34  VLQ 26
           +LQ
Sbjct: 106 ILQ 108


>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
          Length = 259

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 425 PDVQIVSTLDEAATDQLITALREEL-DIGETV 517
           PD+ +   LD+ ATD    A  EE+ D+GE V
Sbjct: 108 PDLDLNKALDQGATDDARKATMEEVSDLGEFV 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,792
Number of Sequences: 37544
Number of extensions: 393160
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)