Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p01f
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)               28   5.4  
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_31624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 527 RSFRRSPRCPVPHAAP*SAGQWRPRLKCSQSAHQARWTNEEALCG 393
           +SF RSP C    A    +   R RLK  +S    R  +  A+CG
Sbjct: 81  QSFTRSPLCTFSEALQPLSSSSRSRLKGPRSKKNPRKPSSAAICG 125


>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
          Length = 632

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 538 VNDRDLFDG-----LPDVQFLTQRRDQLVSGGLV*SAHNLHIRLV 419
           VN +DLFD      L ++Q +   RD ++ GGL    HN ++  V
Sbjct: 576 VNSQDLFDAEMNRILSELQRVLNNRDDILIGGLNEDDHNKNVEAV 620


>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 212 KRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRI 316
           K +  ML+C F   L++    I GG L Y    +I
Sbjct: 77  KENKCMLICFFAFLLLLLILEIVGGALAYNNKDKI 111


>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 139 LRLVSVETGLRENGHDKIIIKHTLIHYD 56
           +R +  E GL E+GHD   +K  + +YD
Sbjct: 249 VRRLGQEKGLGESGHDNKAVKFIMCNYD 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,880,029
Number of Sequences: 59808
Number of extensions: 431515
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)