Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p01f
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39742-2|AAM51521.1| 321|Caenorhabditis elegans Hypothetical pr... 37 0.014
U39742-1|AAK39198.1| 322|Caenorhabditis elegans Hypothetical pr... 37 0.014
U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical pr... 31 0.51
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.7
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.7
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024755-1|AAF59637.2| 369|Caenorhabditis elegans Hypothetical ... 28 4.8
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 6.3
U70852-15|AAK29824.1| 543|Caenorhabditis elegans Hypothetical p... 28 6.3
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 6.3
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 6.3
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 6.3
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 8.3
>U39742-2|AAM51521.1| 321|Caenorhabditis elegans Hypothetical
protein C25F6.7b protein.
Length = 321
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +2
Query: 494 ELDIGETVEKISV--IDNGRRIHFIHDFQTNTTGIIDS--DRCFTMEL 625
E++ ++ EKI V + R F+HDF+ N T I+D+ +RCF EL
Sbjct: 170 EINANDSYEKIDVPKFGSNRPAIFLHDFKQNLTAIVDTVGNRCFVKEL 217
>U39742-1|AAK39198.1| 322|Caenorhabditis elegans Hypothetical
protein C25F6.7a protein.
Length = 322
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +2
Query: 494 ELDIGETVEKISV--IDNGRRIHFIHDFQTNTTGIIDS--DRCFTMEL 625
E++ ++ EKI V + R F+HDF+ N T I+D+ +RCF EL
Sbjct: 171 EINANDSYEKIDVPKFGSNRPAIFLHDFKQNLTAIVDTVGNRCFVKEL 218
>U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical
protein F47C12.2 protein.
Length = 391
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 413 WSNEPDVQIVSTLDEAATDQLITALREELDIGETVEKISVIDNGRRIHFIHDFQTNTTG 589
+ EPD I++ LD + T ++ ETV+ I+ N + F D Q+N G
Sbjct: 270 FETEPDFDILTVLDGGPAENSTTVIKRLSGSMETVQTITSATNMMIVQFRTDAQSNARG 328
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/86 (18%), Positives = 40/86 (46%)
Frame = +2
Query: 350 IPISTRDSQLMEPNFRTMPLRWSNEPDVQIVSTLDEAATDQLITALREELDIGETVEKIS 529
+P +++E T R E + +I + ++ + DQ + + E D+ E ++ +
Sbjct: 4119 VPSEKSVDRVIETTTTTTVTREHFEAEDEIPTIVESSHDDQAASPVPSEEDVHEQIQTTT 4178
Query: 530 VIDNGRRIHFIHDFQTNTTGIIDSDR 607
+ HF+ D + ++ + +SD+
Sbjct: 4179 TTTTVTKEHFVPDDEIDSEHMNESDK 4204
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/86 (18%), Positives = 40/86 (46%)
Frame = +2
Query: 350 IPISTRDSQLMEPNFRTMPLRWSNEPDVQIVSTLDEAATDQLITALREELDIGETVEKIS 529
+P +++E T R E + +I + ++ + DQ + + E D+ E ++ +
Sbjct: 4119 VPSEKSVDRVIETTTTTTVTREHFEAEDEIPTIVESSHDDQAASPVPSEEDVHEQIQTTT 4178
Query: 530 VIDNGRRIHFIHDFQTNTTGIIDSDR 607
+ HF+ D + ++ + +SD+
Sbjct: 4179 TTTTVTKEHFVPDDEIDSEHMNESDK 4204
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 440 VSTLDEAATDQLITALREELDIGETVEKISVI-DNGRR 550
+ T+ +D+L+ + +D+ +EK+SVI DNGR+
Sbjct: 42 MQTVHSGLSDELLFCKSKNVDMRSEIEKLSVIRDNGRQ 79
>AC024755-1|AAF59637.2| 369|Caenorhabditis elegans Hypothetical
protein Y34B4A.7 protein.
Length = 369
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 586 SCISLEIMNEMNAAAIVNDRDLFDGLPDVQFLTQR 482
SCI + I +E+N AI + D +V FL +R
Sbjct: 315 SCIKVSITDEVNVIAICTKQAFTDSTSNVDFLKRR 349
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 161 EDELIDMHNIEGPYIMRKRSATMLVCM 241
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 161 EDELIDMHNIEGPYIMRKRSATMLVCM 241
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>U70852-15|AAK29824.1| 543|Caenorhabditis elegans Hypothetical
protein F45E4.11 protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 113 PSLNAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLVCMFLMALVVAATSIA 280
PS N AD +DE H++ P MR A ML C F+ L ++++++A
Sbjct: 36 PSTNNGSTSMAADDQSQDEEHSAHSVLFP-SMRLMLAAMLCCCFI-TLSISSSNLA 89
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 161 EDELIDMHNIEGPYIMRKRSATMLVCM 241
ED++ +HN+ GP+++R+ A +L M
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGM 842
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 161 EDELIDMHNIEGPYIMRKRSATMLVCM 241
ED++ +HN+ GP+++R+ A +L M
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGM 842
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 161 EDELIDMHNIEGPYIMRKRSATMLVCM 241
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 407 LRWSNEPDVQIVSTLDEAATDQLITALREELDIGETVEKISVIDNGRRIHFIHDFQTNTT 586
LR N P +V T + A D+ +TA+REEL++ + + + IHF H N T
Sbjct: 121 LRRYNWPKFGVV-TSEMAGNDRFVTAIREELELFSN-KSTKLFE---MIHFSHMNTKNDT 175
Query: 587 GI 592
+
Sbjct: 176 DV 177
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 407 LRWSNEPDVQIVSTLDEAATDQLITALREELDIGETVEKISVIDNGRRIHFIHDFQTNTT 586
LR N P +V T + A D+ +TA+REEL++ + + + IHF H N T
Sbjct: 121 LRRYNWPKFGVV-TSEMAGNDRFVTAIREELELFSN-KSTKLFE---MIHFSHMNTKNDT 175
Query: 587 GI 592
+
Sbjct: 176 DV 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,689
Number of Sequences: 27780
Number of extensions: 304996
Number of successful extensions: 664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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