Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o22r
         (734 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071445-1|AAL49067.1|  419|Drosophila melanogaster RE52884p pro...   125   7e-29
AJ009963-1|CAA08919.1|  380|Drosophila melanogaster farnesyl pyr...   125   7e-29
AF132554-1|AAD27853.1|  419|Drosophila melanogaster GM06581p pro...   125   7e-29
AE013599-1264|AAF58670.1|  419|Drosophila melanogaster CG12389-P...   125   7e-29
AE014297-3567|AAF56312.2| 1402|Drosophila melanogaster CG5789-PA...    29   6.6  

>AY071445-1|AAL49067.1|  419|Drosophila melanogaster RE52884p
           protein.
          Length = 419

 Score =  125 bits (301), Expect = 7e-29
 Identities = 53/95 (55%), Positives = 74/95 (77%)
 Frame = -3

Query: 732 KYGTDXQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 553
           K GTD QD KC+WLAVVA+QRA   QKQIM D YG  +P  + R+K+LY+EL LP TY++
Sbjct: 323 KIGTDIQDNKCSWLAVVAMQRANVEQKQIMVDCYGKEEPAKVERVKELYKELGLPSTYAI 382

Query: 552 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
           FEE +Y++++T IQQ +RG+PH+ F +IL+ I++R
Sbjct: 383 FEEESYNMIKTHIQQTSRGVPHQTFLQILNKIYQR 417


>AJ009963-1|CAA08919.1|  380|Drosophila melanogaster farnesyl
           pyrophosphate synthase protein.
          Length = 380

 Score =  125 bits (301), Expect = 7e-29
 Identities = 53/95 (55%), Positives = 74/95 (77%)
 Frame = -3

Query: 732 KYGTDXQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 553
           K GTD QD KC+WLAVVA+QRA   QKQIM D YG  +P  + R+K+LY+EL LP TY++
Sbjct: 284 KIGTDIQDNKCSWLAVVAMQRANVEQKQIMVDCYGKEEPAKVERVKELYKELGLPSTYAI 343

Query: 552 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
           FEE +Y++++T IQQ +RG+PH+ F +IL+ I++R
Sbjct: 344 FEEESYNMIKTHIQQTSRGVPHQTFLQILNKIYQR 378


>AF132554-1|AAD27853.1|  419|Drosophila melanogaster GM06581p
           protein.
          Length = 419

 Score =  125 bits (301), Expect = 7e-29
 Identities = 53/95 (55%), Positives = 74/95 (77%)
 Frame = -3

Query: 732 KYGTDXQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 553
           K GTD QD KC+WLAVVA+QRA   QKQIM D YG  +P  + R+K+LY+EL LP TY++
Sbjct: 323 KIGTDIQDNKCSWLAVVAMQRANVEQKQIMVDCYGKEEPAKVERVKELYKELGLPSTYAI 382

Query: 552 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
           FEE +Y++++T IQQ +RG+PH+ F +IL+ I++R
Sbjct: 383 FEEESYNMIKTHIQQTSRGVPHQTFLQILNKIYQR 417


>AE013599-1264|AAF58670.1|  419|Drosophila melanogaster CG12389-PA
           protein.
          Length = 419

 Score =  125 bits (301), Expect = 7e-29
 Identities = 53/95 (55%), Positives = 74/95 (77%)
 Frame = -3

Query: 732 KYGTDXQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 553
           K GTD QD KC+WLAVVA+QRA   QKQIM D YG  +P  + R+K+LY+EL LP TY++
Sbjct: 323 KIGTDIQDNKCSWLAVVAMQRANVEQKQIMVDCYGKEEPAKVERVKELYKELGLPSTYAI 382

Query: 552 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
           FEE +Y++++T IQQ +RG+PH+ F +IL+ I++R
Sbjct: 383 FEEESYNMIKTHIQQTSRGVPHQTFLQILNKIYQR 417


>AE014297-3567|AAF56312.2| 1402|Drosophila melanogaster CG5789-PA
            protein.
          Length = 1402

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 67   TKTIIQRTVKLLF*QITVLTTINRYNQV 150
            T  +IQRT+++ F Q TVLT  +R + V
Sbjct: 1303 TDALIQRTIRIKFKQCTVLTVAHRLHTV 1330


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,971,939
Number of Sequences: 53049
Number of extensions: 492390
Number of successful extensions: 952
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)