Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o22f
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.34 
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   1.8  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   2.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.4  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    26   3.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   3.2  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   4.2  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   5.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   7.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.3  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   7.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   9.7  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   9.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.7  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   9.7  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.7  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.7  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 536 YIILQQLSQPFAGFRNIN 483
           Y+ LQ L++P+ GFRNIN
Sbjct: 533 YVSLQILNKPYVGFRNIN 550


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 408 SKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQY 530
           ++D  +   ++FP+IVR++     + D+    KW+A  L +
Sbjct: 16  ARDIVKTDQSLFPEIVRNILSVANYSDI-RYKKWMANFLWF 55


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 378 MPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWL 512
           +P     + V   Q+  F+  F DIV  + E GK+   P+AS+ L
Sbjct: 320 LPEVPSAMPVPNAQNESFVKSFTDIVHGVQEKGKY---PQASEIL 361


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 427  SSWLSFRTSSG-ISLRLASTLMFRKPANGWLSCCNIM 534
            +SW S R  +  I  R+ ++   +   N W SCC ++
Sbjct: 1037 NSWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLV 1073


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 295 GDLLADWSSLGAMASELVTLVVLL 224
           G  + DW + G  + EL+ LVV+L
Sbjct: 77  GGCIIDWHTCGLFSEELIDLVVVL 100


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 50  DKNKSLLN*IPSNNFF*RNFKTRQILVYNVLKYYKNVLD-KEKLRKVYAGVQK 205
           DKN   +N + S +FF  N    + LV  +  Y+  ++D  + L+ V++  +K
Sbjct: 434 DKNDLYINWLKSLSFFQTNSSCAEALVKVIPHYHNKLIDFSQVLQLVFSASEK 486


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 370 LRKCRWLPEDWPFPRTSPGSSWLSFRTSSGISLR 471
           L K R L E W +  T+PG S    +TSS   L+
Sbjct: 112 LNKGRRLIEIWKYYETAPGQSSFEGQTSSDSKLQ 145


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 388 LPEDWPFPRTSPGSSWLSFRTSSGIS-LRLASTLMFRKPANGWL 516
           LP   P P+  P + W  F    GI+  +    L+F + +  W+
Sbjct: 78  LPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWV 121


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 294 PQAEETGPKRLLKLQKYHRFLSTLTPQEMP 383
           PQA+ +   RLL    + +F+S+ +P E P
Sbjct: 140 PQAKRSS-SRLLSTDAFSQFISSFSPPEKP 168


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 383 RHFLRSQGRQESVIFLQLQQSLRSGFLSLW 294
           RHFLR        I L +   L  G LS+W
Sbjct: 211 RHFLRDVAFLTGTILLVIMFVLHDGSLSIW 240


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 333 LQKYHRF-LSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEASK 506
           L+K +R    T+  + + +A R +  SK  +  F   FP I + L      +D+  ASK
Sbjct: 150 LKKLYRIPFDTVEAESVRLADRIVVNSKFTASVFKKAFPKIRKPLRIVHPCVDIEAASK 208


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 328 SSLFGPVSSACG--DLLADWSSLGAMASELVTLVVLLMCRRTSFLY 197
           S +FG V +  G   L  DW+ + ++++ L+T      C  TSF++
Sbjct: 313 SQIFG-VKTGLGLFPLTLDWAQISSLSNPLITPWWATCCIFTSFVF 357


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 324 LLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVF 443
           L+KL  Y    ST+T +    A R +  S  +  EF+A +
Sbjct: 158 LIKLWDYKESSSTITFRGNSEAARDVVFSPSEPNEFVAAY 197


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 462  LTETGKHIDVPEASKWLAKLLQYNVPNGK 548
            L   G H+ + E +     LLQY +PN K
Sbjct: 1774 LNRAGHHVVIYERADRPGGLLQYGIPNMK 1802


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 104 NFKTRQILVYNVLKYYKNVLDKEK 175
           +F  R++LV  V  +YK  LDKE+
Sbjct: 217 DFVVREVLVQIVHSFYKAHLDKEE 240


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 222 ISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKR 323
           +S  TSV  S  ++     SAS SP +     KR
Sbjct: 264 VSSATSVAASSTISSATSSSASASPTSSSVSGKR 297


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 396 LG*PSAFPEESGSTGICDIFAASAVSSVRFPQPVVTCSPTGPASGP 259
           +G PS+  + S    +    AAS +S    PQ + +  P+G  S P
Sbjct: 172 IGIPSSNIDSSQFLPVSRAIAASEISPSSSPQLLTSFLPSGSVSNP 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,824
Number of Sequences: 5004
Number of extensions: 47404
Number of successful extensions: 176
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)