Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o22f
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 32 0.26
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 30 1.1
04_01_0390 - 5133416-5133472,5134153-5134234,5134368-5134426 30 1.4
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 29 2.4
12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711... 29 3.2
07_03_0213 - 15244299-15246311 29 3.2
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 3.2
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 29 3.2
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 28 5.6
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 7.5
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 7.5
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 27 7.5
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 27 7.5
11_06_0337 - 22454281-22456399,22458520-22459388 27 9.9
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 27 9.9
01_05_0052 + 17601317-17602869,17603315-17603432 27 9.9
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 414 DQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGK 548
D F+ + + DL EA +WLA+++ YNVP GK
Sbjct: 53 DARERFVQAYGRLRDDLVGDDSCELTDEARRWLAQMIDYNVPGGK 97
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 495 EASKWLAKLLQYNVPNGK 548
E +W+AK++ YNVP GK
Sbjct: 95 ETRQWVAKMMDYNVPGGK 112
>04_01_0390 - 5133416-5133472,5134153-5134234,5134368-5134426
Length = 65
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 326 QSLRSGFLSLW*LA--RRLV-QPRGHGIRIGDASC 231
Q F + W L R LV QPRG GIRI D+SC
Sbjct: 4 QKFNVNFSTSWYLTVPRSLVGQPRGQGIRIYDSSC 38
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 387 ATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGK 548
A G V K++ EF ++ + +L + +W+ ++L YNVP GK
Sbjct: 8 ACGGGGVDKEKE-EFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGK 60
>12_01_0778 +
7111562-7112152,7113034-7113157,7113252-7113395,
7113485-7113630,7113716-7113838,7113922-7114089,
7114253-7114474,7114572-7114745
Length = 563
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 500 GFRNINVLASLSEIPDDVRKDSHELPGLVLGNGQSSGS 387
G N+ L+++S + D R P VLGN SSG+
Sbjct: 34 GAANMRCLSTVSSVSDAARAVMSNEPATVLGNSGSSGN 71
>07_03_0213 - 15244299-15246311
Length = 670
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 441 FPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNG 545
FP ++ L +H+ +W KL QYN+ G
Sbjct: 353 FPGVIAALLSLVRHLHPDSRGEWSGKLAQYNMIEG 387
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +3
Query: 213 RRHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKYHRFLSTLTPQEMPMAT 392
+ H+ K T++D+M PR ++A P P + + Y RF T T E P+
Sbjct: 77 QEHVIKVREATSNDSMPPRFTRAA---PAMTRAAPFKTRSYEAYPRFRRT-TLGEWPVRE 132
Query: 393 RGLAVSKDQSREFMAVFP 446
SK R ++ P
Sbjct: 133 IRTGPSKAAPRRRVSPEP 150
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 303 EETGPKR--LLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSRE 428
++ GPKR LLK QK + T+ P+E+ + LA +++RE
Sbjct: 500 DKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDVLAAKYEEARE 543
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 RQLASPILMPWPRGWTSRRASHHRLRKPDRRDC*SCKNITDSCRP*LLRK-CRWLPEDWP 405
R+ A WP WT R ++ HR+ +R ++ SC P +R+ WP
Sbjct: 550 RRFAETTAASWPMLWTLRYSTFHRI---NRSFVAYATSLKTSCGPSDIRRFAETTAASWP 606
Query: 406 FP 411
P
Sbjct: 607 MP 608
Score = 27.1 bits (57), Expect = 9.9
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Frame = +1
Query: 259 WPRGWTSRRASHHRLRKPDRRDC*SCKNITDSCRP*LLRK-CRWLPEDWPFPRTSPGSSW 435
WP WT R ++ HR+ +R ++ SC P +R+ WP P S
Sbjct: 742 WPMLWTLRYSTFHRI---NRSFVAYATSLKTSCGPSDIRRFAETTAASWPMP-----SDI 793
Query: 436 LSFRTSSGISLRLASTLMF----RKPANGWLSCCNIMYQTVR 549
F ++ S + TL + R A W + Y T R
Sbjct: 794 RRFAETTAASWAMLWTLRYSTFRRTTAASWPMLWTLRYSTFR 835
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 325 SLFGPVSSACGDLLADWSSLGAMASELVTLVVLLM 221
+LFG + S +L+ +WS + L+TLV +++
Sbjct: 183 ALFGLIGSMLSELITNWSLYANKVAALLTLVFVIV 217
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 180 EKFMQAYKNEVRRHISKTTSVTNSD 254
EKF + ++NEV+ H+ KTT SD
Sbjct: 472 EKFKK-FQNEVQNHLGKTTKYLRSD 495
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 405 RPVLG*PSAFPEESGSTGICDIFAASAVSSVRFPQPVVTC 286
R ++ P AFP SGS G D A + ++ + P C
Sbjct: 176 RNIVRRPLAFPSASGSCGPADADACALIARLLAKDPAARC 215
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 419 LVLGNGQSSGSHRHFLRSQGRQE---SVIFLQLQQSLRSGFLSLW*LA 285
LV G + HRH +GR+E S++ L +++ R G W LA
Sbjct: 369 LVAGGTHARAPHRHVKDGRGRRETSLSIVALHARRARRPGEEGRWMLA 416
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 321 RLLKLQKYHRFLSTLTPQEMPMATR-----GLAVSKDQSREFMAVFPDIVRDLTETGKHI 485
RL L+K L++LT + +R L S D +++ + + ++ E+G I
Sbjct: 830 RLHNLEKLTLSLTSLTTHTLVTLSRLPELFSLIFSLDAAKDISNILKTVHKNTLESGGKI 889
Query: 486 DVPEASKWLAKLLQYNVP 539
VP+ +LL++ P
Sbjct: 890 FVPDGGFTKLRLLRFTAP 907
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 366 TPQEMPMATRGLAVSKDQSREFMAV 440
+PQ+ P + RGLA+S +SR AV
Sbjct: 50 SPQDTPASLRGLALSPPESRAAAAV 74
>01_05_0052 + 17601317-17602869,17603315-17603432
Length = 556
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 241 TLVVLLMCRRTSFLYACINFSKLF 170
T+++ L+CRR F AC F +F
Sbjct: 397 TMLIHLLCRRHQFEEACAEFEDMF 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,021,939
Number of Sequences: 37544
Number of extensions: 330045
Number of successful extensions: 1134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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