Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o16f
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.44 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   9.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 490 PEDSKRPVAEPTETTSTNVSREEME 564
           P  +  P  EP+ TTST +S++ ++
Sbjct: 380 PTTTASPTTEPSTTTSTTISQKHIK 404


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 581 LLSVVNSISSRLTFVEVVSVGSATGLLLSSGCFC 480
           LLS    ++        +S+G A G     GC C
Sbjct: 48  LLSFKGQVNDSACAANCLSLGKAGGHCEKVGCIC 81


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 429 RQLGLRERRVENHLPA 476
           R++ L ERR ++HL A
Sbjct: 230 RRIVLEERRAQSHLEA 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 139 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELS 237
           SP   +S +  HSL+     +  H D+  +  S
Sbjct: 84  SPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHAS 116


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 92  YCGAAETAASSPHNTKAIILVER 24
           YCG  +    SP++T A+ +  R
Sbjct: 86  YCGIGKECELSPNSTIAVCVCMR 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.130    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,631
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)