Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o15r
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    31   0.13 
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    29   0.90 

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 651 FVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 556
           ++PF AG   C+G ++A + L  I+S  + ++
Sbjct: 432 YLPFGAGRHRCIGEQFAYMHLSTIISKFVHDY 463


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 723 FTQSNQXDPDNFLPERSANRHYYAFVPFSAGPRSCVGRKYAM 598
           + +    +PD + P   A +    ++ F  GP  C+G++YA+
Sbjct: 425 YPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,837
Number of Sequences: 5004
Number of extensions: 39655
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)