Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o13r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   6.6  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.8  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.8  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 411 RSASTSQRDCYYPLLDEKLISNKFDKEYIID 503
           ++ +++  +C YP+ DEK +   + K+Y ID
Sbjct: 57  KACASNNLECTYPVKDEKEMD--YSKDYFID 85


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 573 LTVHIDA*NV---DFDSFFSVLGIGIISFLSTCMSIMWSGIYDVFNF 704
           +T+ +D  N+     D +  ++G G+   +STC+ + W  I +V ++
Sbjct: 370 ITIKMDKINLGERSIDYYADLIGSGVGVVVSTCVFVAWIAIGNVMHW 416


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 561 FPCGLTVHIDA*NVDFDSFFSVLGIG 638
           FP  ++ ++++ NV FD F S+L  G
Sbjct: 273 FPSSISGNVESGNVAFDEFLSLLHAG 298


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 489 PYQIYLRLASRLTVGSSNRVAMWMRSGSLTSSEI-KISI 376
           PYQ++ +  SRL +G S+++ +     S  ++E+ KIS+
Sbjct: 216 PYQLFWQSESRLVIGWSDQIMIVSIQRSNVANELPKISL 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,702
Number of Sequences: 5004
Number of extensions: 49667
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)