Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o13r
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.1  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   7.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 614 RIKVNISSVDMYCETAWESTKIPPI 540
           +I+V I   D Y    W+  K+P +
Sbjct: 186 QIEVGIDLTDYYISVEWDIIKVPAV 210


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 547 GILVLSHAVSQYISTLEMLTLIRFSVC*VSA*YH 648
           GI  L   VS+  S + +LT++ FS+    A YH
Sbjct: 105 GICKLRAYVSETSSYVSVLTIVAFSIERYLAIYH 138


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 645 SFLSTCMSIMWSGIYDVFNF*QLCSR*VII 734
           +F+   + + +SG++ VF+F  L S  ++I
Sbjct: 52  TFMEGVIVLAFSGLFSVFSFLILVSSYIVI 81


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 603 DFDSFFSVLGIGIIS 647
           +FD F   LG+GI++
Sbjct: 16  NFDDFMKALGVGIMT 30


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 368 ISKQQRNLQRCFFFLNELK 312
           ++K  RN   CFF +N+L+
Sbjct: 554 LNKITRNSLDCFFTMNDLE 572


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 368 ISKQQRNLQRCFFFLNELK 312
           ++K  RN   CFF +N+L+
Sbjct: 554 LNKITRNSLDCFFTMNDLE 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,438
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)