Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o13f
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    43   3e-05
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.39 
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    29   0.51 
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   1.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   1.6  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    26   3.6  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   6.3  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   6.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 31/41 (75%)
 Frame = +2

Query: 92  LVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADA 214
           ++ + +DD ++E  DEEE+  +VN+VLDEIG+++S  + DA
Sbjct: 145 MIDENMDDALEED-DEEEADELVNKVLDEIGVDLSQGLPDA 184


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +2

Query: 53  RNPLNL*EKNFVCLVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEI 193
           +NP  +  KNFV L+ DT  D  +E   E+    IV QV D   IE+
Sbjct: 712 KNPPVMTVKNFVHLLDDTNFDFEEEVLLEKMRKEIVQQVRDNEEIEV 758


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 83  FVCLVSDTLDDIMDESGDEEESAG-IVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDA 259
           ++CL+   +D I+D   D  E  G  VN  L  I  EI   ++     S N++ QS  D+
Sbjct: 115 YLCLIQLAIDGILDAVADVGEEIGTAVNDTLHAIADEIEDTVS-----SLNEVFQSAEDS 169

Query: 260 DKDIMAQLAK 289
            + + + L +
Sbjct: 170 LEKVASWLGE 179


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 101 DTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMAD 211
           D LDD++  S DE+ +  +     +E G E + K  D
Sbjct: 28  DDLDDVLSSSSDEDNNENVGQDYAEESGGEGNEKSED 64


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 82  ILLSKIQRIPLNKYVNYLCIF 20
           + LSK+  +PLNK ++YL  F
Sbjct: 154 LFLSKLNSVPLNKKISYLYTF 174


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 DIMDESGDEEESAGIVNQVLDEIGIEI 193
           D   E G+EEE    +++ +DE G +I
Sbjct: 128 DFSSEDGEEEEENDYIDEDVDEAGYDI 154


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 110  DDIMDESGDEEESAGI-VNQVLDEIGIEISGKM 205
            +DI DES  +EES+G+  + +LD    +I  +M
Sbjct: 908  EDISDESETDEESSGLEESDLLDSEDEDIDNEM 940


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 200 KMADAPSVSRNKIGQSTTDADKD 268
           K +D+P V R  + QSTT   +D
Sbjct: 33  KRSDSPPVPRELVAQSTTSRKRD 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,106
Number of Sequences: 5004
Number of extensions: 33399
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)