Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o13f
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327... 53 1e-07
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559... 48 3e-06
03_05_0445 - 24401899-24401992,24402098-24402162,24402262-244022... 47 7e-06
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 45 3e-05
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 30 1.2
06_03_0904 + 25832026-25832643 28 3.6
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 27 6.3
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961... 27 6.3
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 27 8.4
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 27 8.4
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 27 8.4
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 27 8.4
>10_08_0366 -
17232010-17232061,17232546-17232601,17232692-17232727,
17232861-17232941,17233060-17233131,17233394-17233465,
17233555-17233659,17233754-17233804,17234075-17234109,
17234692-17234736,17234940-17234973
Length = 212
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +2
Query: 92 LVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPS--VSRNKIGQSTTDADK 265
++SD++D+I+D+ EEE+ + NQVLDEIG++I+ +++ AP ++ K+ +
Sbjct: 141 MMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSSAPKGRITGKKVQADESSELD 200
Query: 266 DIMAQLAKLKS 298
++ +LA LK+
Sbjct: 201 ELEKRLAALKN 211
>11_08_0073 -
28155156-28155296,28155422-28155682,28155858-28155962,
28156563-28156693,28156905-28156941
Length = 224
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/44 (43%), Positives = 33/44 (75%)
Frame = +2
Query: 95 VSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVS 226
++D +DD ++ +EEE+ +VNQVLDEIGI+++ ++ APS +
Sbjct: 143 MNDAIDDALEGDEEEEETEELVNQVLDEIGIDVNSELVGAPSTA 186
>03_05_0445 -
24401899-24401992,24402098-24402162,24402262-24402297,
24402419-24402499,24403084-24403155,24403265-24403336,
24403628-24403678,24404374-24404408,24404615-24404659,
24405067-24405100
Length = 194
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/59 (33%), Positives = 39/59 (66%)
Frame = +2
Query: 92 LVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDADKD 268
++SD +D+ +D+ EEE+ + NQVLDEIG++++ +++ AP + +I S A+ +
Sbjct: 106 MMSDAIDETLDKDEAEEETEELTNQVLDEIGVDVASQLSSAP---KGRIAASNRKAESN 161
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +2
Query: 92 LVSDTLDDIMDESGD-EEESAGIVNQVLDEIGIEISGKMADAPSVS 226
++ D +DD ++ D EEE+ +VNQVLDEIGI+I+ ++ APS +
Sbjct: 167 VMGDAIDDALEGDEDQEEETEELVNQVLDEIGIDINQELVKAPSAA 212
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 101 DTLDDIMDESGDEEESAGIVNQVLDEIGIEISG 199
D LD + G +SAG++++V+ ++ +EI G
Sbjct: 756 DELDSLAPARGSSSDSAGVMDRVVSQLLVEIDG 788
>06_03_0904 + 25832026-25832643
Length = 205
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 128 SGDEEESAGIVNQVLDEIGIEISGKM--ADAPSVSRNKIGQSTTDADKDIMAQLAKLKS 298
S E E ++ QV D+ G+E+S + A A ++ K + D D D+ +LA+LK+
Sbjct: 146 STPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIPAAKEKEKAVDED-DLSRRLAELKA 203
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 95 VSDTLDDIM--DESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIG 241
VSD D I+ E G E+ + I + LD+IG+E S + + +K G
Sbjct: 190 VSDMFDAIVVSSEVGHEKPAPEIFKRALDQIGVEASKAVHVGDDETADKAG 240
>06_01_1186 -
10195175-10195621,10195882-10195930,10196019-10196168,
10196513-10196658,10196877-10196914,10197000-10197216,
10197393-10197611,10197753-10197879,10198631-10198812,
10198928-10199131,10199773-10199782,10200789-10200815,
10201072-10201132,10201731-10201851
Length = 665
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 74 EKNFVCLVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQS 247
E N V + + I+DES D EES ++N +L +G + +G A ++R+ I S
Sbjct: 206 EPNIVNSMQSVMALIIDESEDIEES--LLNVLLSTLGRKKTGVSLPARKLARHVIEHS 261
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 101 DTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDADKDIMAQ 280
+ LD+ D E++A VN +D G +G + D V+ +IG T + + ++ +
Sbjct: 358 EQLDEATKRFDDSEKAA--VNVQVDGGGTVHAGVLDDGTVVAVQRIGYDTAEKLRLVLDR 415
Query: 281 LAKLKST*HSNV 316
+ L H N+
Sbjct: 416 VELLSEVSHRNI 427
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 113 DIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQST 250
D DE G+EEE+AG + DE E + + V +++ G+ST
Sbjct: 112 DEEDEEGEEEETAGDSAEEGDEEDEEGEEEETEEECVQKDEGGEST 157
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 113 DIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQST 250
D DE G+EEE+AG + DE E + + V +++ G+ST
Sbjct: 112 DEEDEEGEEEETAGDSAEEGDEEDEEGEEEETEEECVQKDEGGEST 157
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 113 DIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQST 250
D DE G+EEE+AG + DE E + + V +++ G+ST
Sbjct: 112 DEEDEEGEEEETAGDSAEEGDEEDEEGEEEETEEECVQKDEGGEST 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,693
Number of Sequences: 37544
Number of extensions: 195627
Number of successful extensions: 416
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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