Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o13f
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 68 4e-12
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 52 2e-07
L14433-5|AAA27976.2| 202|Caenorhabditis elegans Hypothetical pr... 35 0.029
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 29 1.9
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 28 3.3
U13019-2|AAM15600.1| 192|Caenorhabditis elegans Homolog of odr-... 27 7.6
U13019-1|AAM15601.1| 196|Caenorhabditis elegans Homolog of odr-... 27 7.6
AF324056-1|AAK01417.1| 150|Caenorhabditis elegans Ly-6-related ... 27 7.6
AF036693-2|AAO61430.1| 113|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 67.7 bits (158), Expect = 4e-12
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +2
Query: 92 LVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDADKDI 271
+++DTLD I+D GD +E IVNQVLDEIGIE++ K+A+ P++ + D D D+
Sbjct: 140 MMNDTLDSILDAPGDADEQDAIVNQVLDEIGIEMNSKLANVPALPTKVSSTAPADFD-DL 198
Query: 272 MAQLAKLKS 298
AQLA+L+S
Sbjct: 199 EAQLARLRS 207
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +2
Query: 92 LVSDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVS 226
++ D +DD + ++GDEEE+ IVNQVLDE+GI++ +MA PS +
Sbjct: 142 VMGDAIDDALGDAGDEEETDQIVNQVLDELGIQMGEEMAGLPSAA 186
>L14433-5|AAA27976.2| 202|Caenorhabditis elegans Hypothetical
protein C50C3.5 protein.
Length = 202
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 116 IMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDADKDIMAQLAKLK 295
+MD+ G S+ V ++L+E+GI++S K+ A S + G D ++ + A +K+K
Sbjct: 58 LMDDDGSGTISSSEVAKMLNELGIDVSPKVVQAVMRSSDVSGDGQIDFEEFLAAVTSKIK 117
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 310 QCMFNYALHIIVS*VNGHGLSFTVINSDAT 399
Q + +Y ++ S +NGHGL F + DAT
Sbjct: 227 QVLNSYEFDMVESSINGHGLEFECLGPDAT 256
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 98 SDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDADKDI 271
SD D+ ++E +E+E + + D E G A AP+ K STT D++I
Sbjct: 207 SDAADESVEEEEEEDEDSDDSDDSDDSEEEEAEGSTAQAPA---EKANSSTTTTDQNI 261
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +2
Query: 74 EKNFVCLVSDTLDDIMD------ESGDEEESAGIVNQVLDEIGIEISGKMADAP 217
EKN + V++ + ++D E+ +E IV+++ DEI + G +AD P
Sbjct: 1388 EKNSIDTVNEAEEWLLDGLIAPLETPSSDEIVNIVDKMADEIARHLEGSIADLP 1441
>U13019-2|AAM15600.1| 192|Caenorhabditis elegans Homolog of
odr-2(two) protein 4,isoform a protein.
Length = 192
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 475 CNASSSLSEITSNNTFKINKLLIFI 401
CN L E++S+N+F+I+ +L+ +
Sbjct: 160 CNEHDMLRELSSSNSFQIHSVLLLV 184
>U13019-1|AAM15601.1| 196|Caenorhabditis elegans Homolog of
odr-2(two) protein 4,isoform b protein.
Length = 196
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 475 CNASSSLSEITSNNTFKINKLLIFI 401
CN L E++S+N+F+I+ +L+ +
Sbjct: 164 CNEHDMLRELSSSNSFQIHSVLLLV 188
>AF324056-1|AAK01417.1| 150|Caenorhabditis elegans Ly-6-related
protein HOT-4 protein.
Length = 150
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 475 CNASSSLSEITSNNTFKINKLLIFI 401
CN L E++S+N+F+I+ +L+ +
Sbjct: 118 CNEHDMLRELSSSNSFQIHSVLLLV 142
>AF036693-2|AAO61430.1| 113|Caenorhabditis elegans Hypothetical
protein C49A9.10 protein.
Length = 113
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 98 SDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQS 247
++TL+ + +E GD+ ES + VL EI + A +R K G+S
Sbjct: 63 TNTLERVKEEIGDKIESPSVKEYVLMEISMSEKRYKDMAALGTRKKPGES 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,584
Number of Sequences: 27780
Number of extensions: 187357
Number of successful extensions: 503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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