Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o10r
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0002 - 15280292-15281550,15282714-15282840 34 0.045
01_01_0522 - 3834551-3835451,3835992-3836572 28 3.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 3.9
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771... 27 5.1
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 27 6.8
07_01_0576 + 4280671-4280730,4280812-4280865,4280955-4281017,428... 27 6.8
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 27 9.0
05_04_0310 + 20114415-20117819 27 9.0
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 27 9.0
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 34.3 bits (75), Expect = 0.045
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -3
Query: 215 CPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLS 36
C C++L+ A C Y L P +C C + V + +AG+++ A++
Sbjct: 164 CTECLSLVRSAAVCS-YCLSLDNLPPEDSSVTCRC----CNRCVHPYCIAGEHRAALIQP 218
Query: 35 RPVRNIICV 9
V N ICV
Sbjct: 219 IDVENFICV 227
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -3
Query: 290 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPL 117
P IQP L C H+ HA +CA A G+G ++ P V EP+
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPV 328
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 272 LVCPKNTEHRARHAGKCACCP 210
L C K++ R HAGKC CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333
>02_02_0200 -
7718760-7718816,7718910-7719011,7719643-7719726,
7719821-7719916,7720016-7720066,7720162-7720302,
7720717-7720773,7720864-7720938,7721033-7721305,
7721382-7721441,7721531-7721620,7722519-7722638
Length = 401
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 287 MDFFHSSLYHIPKHRTLLTQRMP 355
M+F SLY + KH + + QRMP
Sbjct: 149 MEFVPESLYRVLKHYSNMNQRMP 171
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = -3
Query: 272 LVCPKNTEHRARHAGKCACCPACVTLLGEGAT--CKIYSKELGETPSAVCKEPLKCIKRV 99
L P NTE GKC C A L G G T C + T + ++ R
Sbjct: 746 LDAPNNTECSPYRDGKCCCSLAPKCLAGYGFTKHCVARIDQTDHTVQKSKDDGMQAAARC 805
Query: 98 CT 93
CT
Sbjct: 806 CT 807
>07_01_0576 +
4280671-4280730,4280812-4280865,4280955-4281017,
4281100-4281149,4281255-4281330,4281663-4281863,
4282414-4282501,4282606-4282691,4282773-4282859,
4283289-4283333,4283547-4283567
Length = 276
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 416 TITRNVFKNFKMKTLIFIMLVACVASAAY 330
TI +N+FKN+ + + I + + C AY
Sbjct: 138 TINKNLFKNWPLMSSIILYCIICFDDMAY 166
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 200 LHKRDNKHTFQRVWRDAQCS*GKQVVAVCMDFFHSSLYHIPKHRTLL 340
++ + + Q+V+RD Q Q +A+ D SSL + K L+
Sbjct: 259 VYSKPDVRFIQQVYRDGQLGSNAQSIAMSSDLISSSLRSVQKQPLLM 305
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 61 FPANENDYTSLVQTLLMHLRGSLHTAEGVSPSSFE*ILQVAPSPSKVTQ 207
FPAN N TSL + +M+ G L + PSS + + + P+ ++Q
Sbjct: 1066 FPANFNSLTSLRKLSIMNCTG-LESLPSGFPSSLQVVHLIGCKPTLLSQ 1113
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 136 AEGVSPSSFE*ILQVAPSPSKVTQAGQQAHFPA 234
A G SP S + + A PSK G+QA PA
Sbjct: 60 APGASPRSSKPVPTSAAPPSKAAAEGEQASAPA 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,672
Number of Sequences: 37544
Number of extensions: 256649
Number of successful extensions: 700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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