Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o10r
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   3.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   4.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 182 HLHQVKLHKRDNKHTFQRVWRDAQ 253
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -3

Query: 263 PKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAV 132
           P N    A  A KCA       L  E A C+   K +  +P  V
Sbjct: 153 PMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLV 196


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 401 VFKNFKMKTLIFIMLVACVASAAYGAL 321
           +FK FK +  +++++ AC+    +  L
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGELWTVL 457


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 245 RARHAGKCACCPACVTLLGEGAT 177
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 134 VCKEPLKCIKRVCTKL 87
           + K PL+C+ R CT +
Sbjct: 106 ITKAPLECMCRPCTSV 121


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 375 VDFYNAGGMRCVSSVRCFGMWYRL 304
           +D YNA  M   S+V    M YR+
Sbjct: 176 LDVYNADIMAATSNVIIASMQYRV 199


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 375 VDFYNAGGMRCVSSVRCFGMWYRL 304
           +D YNA  M   S+V    M YR+
Sbjct: 176 LDVYNADIMAATSNVIIASMQYRV 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,263
Number of Sequences: 438
Number of extensions: 2495
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)