Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o10f
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68296-6|CAE17754.1| 195|Caenorhabditis elegans Hypothetical pr... 32 0.20
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical pr... 30 1.0
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical pr... 29 1.8
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 29 1.8
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 29 1.8
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 29 1.8
Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75533-8|CAA99821.1| 464|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 28 3.2
Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical pr... 28 4.2
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 5.6
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 27 7.4
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 27 9.8
U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical pr... 27 9.8
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 27 9.8
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 27 9.8
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 27 9.8
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 27 9.8
>Z68296-6|CAE17754.1| 195|Caenorhabditis elegans Hypothetical
protein C46C2.6a protein.
Length = 195
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 180 CPKNTEHRARHAGKCACCPACVTLLGEGATC-KIYSKELGETPSAVCK-EPLKC 335
CP + + +H+G+CA AC+ G C K++S ++ T CK +P+ C
Sbjct: 60 CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQM--TKKFCCKSDPIDC 111
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHAGKCA-CCPACVTLLGEGATCKIYSKELGETPS 308
G D C C P CP N R +G C CCP T + G C + S G
Sbjct: 530 GVD-CNNGACCPLP-TCPNNIASSQRCSGGCTNCCPVGQTCM-NGGCCDLPSCPSGGFAI 586
Query: 309 AVC 317
++C
Sbjct: 587 SMC 589
>Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical
protein Y41E3.18 protein.
Length = 510
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 186 KNTEHRARHAGKCACCPACVTLLGEGA 266
K T HR +H ACCP C ++ A
Sbjct: 147 KGTWHRVKHVVFVACCPPCCCIIQRSA 173
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Frame = +3
Query: 156 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-------TCKIYSKELGETPSAV 314
PC++P C + H+ C C + G C I S G V
Sbjct: 642 PCVRPHS-CDHSVSHKCHGEQNCPPCTQLTEKMCYGGHRVRKNIPCHIDSVSCG----VV 696
Query: 315 CKEPLKCIKRVCTK 356
CK+PLKC VC +
Sbjct: 697 CKKPLKCGVHVCQR 710
>Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical
protein K05D4.3 protein.
Length = 321
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = -2
Query: 430 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMH 332
++FR+ R R ++ FP ++ Y+++V+T ++H
Sbjct: 47 VVFRSNRQRDRSTPIFPIIKHFYSTVVRTYILH 79
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +3
Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 308
GT +++P + LVC N R GKC C P + A C + G
Sbjct: 302 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 360
Query: 309 AVC 317
+C
Sbjct: 361 GIC 363
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +3
Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 308
GT +++P + LVC N R GKC C P + A C + G
Sbjct: 244 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 302
Query: 309 AVC 317
+C
Sbjct: 303 GIC 305
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +3
Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 308
GT +++P + LVC N R GKC C P + A C + G
Sbjct: 426 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 484
Query: 309 AVC 317
+C
Sbjct: 485 GIC 487
>Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical
protein ZK1010.4 protein.
Length = 263
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 69 TLIFIMLVA--CVASAAYGALVCGTDYCEKNPCI 164
T IF++LVA V A + VCG+ YC P +
Sbjct: 5 TTIFLVLVAGAVVTEACLSSGVCGSSYCAAPPAV 38
>Z75533-8|CAA99821.1| 464|Caenorhabditis elegans Hypothetical
protein C54G4.9 protein.
Length = 464
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 5 FSILTCTQDYYEKRIQKFQNEN 70
FSILTCT E RI +F EN
Sbjct: 443 FSILTCTYKNAEDRILEFMKEN 464
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 28.3 bits (60), Expect = 3.2
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Frame = +3
Query: 72 LIFIMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTL 251
L+F L+ A L CGT C+K+ C P + +C CC C+
Sbjct: 9 LLFTFLIISNAKNQKTTL-CGT--CDKDSC-------PDVSGCEQLKKDQCDCCEVCIRQ 58
Query: 252 LGE-----GATCKIY---SKELGETPSAVCKEPL--KCIKRVC 350
+GE G C + +E S+ CKE + C+K +C
Sbjct: 59 IGETCDGPGLVCDSHLSCHQENDLDGSSRCKERMHDDCLKAIC 101
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 28.3 bits (60), Expect = 3.2
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Frame = +3
Query: 72 LIFIMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTL 251
L+F L+ A L CGT C+K+ C P + +C CC C+
Sbjct: 9 LLFTFLIISNAKNQKTTL-CGT--CDKDSC-------PDVSGCEQLKKDQCDCCEVCIRQ 58
Query: 252 LGE-----GATCKIY---SKELGETPSAVCKEPL--KCIKRVC 350
+GE G C + +E S+ CKE + C+K +C
Sbjct: 59 IGETCDGPGLVCDSHLSCHQENDLDGSSRCKERMHDDCLKAIC 101
>Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1058.6 protein.
Length = 305
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 240 CVTLLGEGATCKIYSKELGETPSAVCKE 323
CV G+G+T ++S +G+ SA+C E
Sbjct: 137 CVWGQGDGSTMPVFSTSVGKIGSAICWE 164
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.5 bits (58), Expect = 5.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +3
Query: 99 VASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKI 278
V GAL GT + IQ + CP + R AG C+T+ G C+
Sbjct: 58 VCQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ- 109
Query: 279 YSKELGE-TPSAVC-KEPLKCI 338
YS++ P A C K +C+
Sbjct: 110 YSQQCSALEPGAYCLKMRCECV 131
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 27.5 bits (58), Expect = 5.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +3
Query: 99 VASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKI 278
V GAL GT + IQ + CP + R AG C+T+ G C+
Sbjct: 58 VCQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ- 109
Query: 279 YSKELGE-TPSAVC-KEPLKCI 338
YS++ P A C K +C+
Sbjct: 110 YSQQCSALEPGAYCLKMRCECV 131
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 96 CVASAAYGALVCGTDYCEKNPCI 164
C +A +G C CE NPC+
Sbjct: 623 CFCAAGFGGPKCDQRPCESNPCL 645
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 180 CPKNTEHRARHAGKCACCPA--CVTLLGEGATCKIYSKELGETPS 308
C K+ + H C C P+ CV G+ +I++ G TP+
Sbjct: 82 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 126
>U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical
protein F08D12.3a protein.
Length = 289
Score = 26.6 bits (56), Expect = 9.8
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 93 ACVASAAYGALVCGTDYCEKNPCIQP-PLVCPKNTEHRARHAGKCACCPACVTLLGEGAT 269
A S G +V G+D CE P C KN + A CPA T L +G+
Sbjct: 224 AVFGSCPPGQVVVGSDCCEAKDVYDPSTATCQKNED--VGPAAVDGACPA-GTSLTKGSV 280
Query: 270 C 272
C
Sbjct: 281 C 281
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 180 CPKNTEHRARHAGKCACCPA--CVTLLGEGATCKIYSKELGETPS 308
C K+ + H C C P+ CV G+ +I++ G TP+
Sbjct: 352 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 396
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 180 CPKNTEHRARHAGKCACCPA--CVTLLGEGATCKIYSKELGETPS 308
C K+ + H C C P+ CV G+ +I++ G TP+
Sbjct: 352 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 396
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 96 CVASAAYGALVCGTDYCEKNPCI 164
C +A +G C CE NPC+
Sbjct: 623 CFCAAGFGRPKCDQRPCESNPCL 645
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 96 CVASAAYGALVCGTDYCEKNPCI 164
C +A +G C CE NPC+
Sbjct: 623 CFCAAGFGRPKCDQRPCESNPCL 645
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,177
Number of Sequences: 27780
Number of extensions: 249878
Number of successful extensions: 733
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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