Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o08r
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co...    30   1.4  
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo...    30   1.9  

>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
           contains Pfam profile PF00566: TBC domain
          Length = 771

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 435 SSNHCGIVDFTLAL**IVLNETIAFWGIRSSV*DYFFS*IISIMLQTNLD 286
           S  +C  ++F  AL  +++ E  AFW +   + DYF       ML++ +D
Sbjct: 332 SVGYCQAMNFFAALLLLLMPEENAFWSLTGIIDDYFHDYYSEEMLESQVD 381


>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
           similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
           (EPI64 protein) {Homo sapiens}; contains Pfam profile
           PF00566: TBC domain
          Length = 777

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -2

Query: 435 SSNHCGIVDFTLAL**IVLNETIAFWGIRSSV*DYFFS*IISIMLQTNLDYITL 274
           S  +C  ++F  AL  +++ E  AFW +   + DYF       M+++ +D + L
Sbjct: 345 SVGYCQAMNFFAALLLLLMPEENAFWALIGLIDDYFNGYYSEEMIESQVDQLVL 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,192
Number of Sequences: 28952
Number of extensions: 238215
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)