Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o08f
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 261 2e-70
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 261 2e-70
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 134 6e-32
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 134 6e-32
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 127 6e-30
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 123 1e-28
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 112 1e-25
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 106 1e-23
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 99 1e-21
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 99 1e-21
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 97 6e-21
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 86 2e-17
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 84 6e-17
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 82 3e-16
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 80 1e-15
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 77 1e-14
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 77 1e-14
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 71 8e-13
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 67 7e-12
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 61 6e-10
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 61 6e-10
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 57 8e-09
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 56 1e-08
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 48 6e-06
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 43 2e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 41 6e-04
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.78
Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF025452-9|AAB70946.1| 348|Caenorhabditis elegans Hypothetical ... 27 7.3
Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical p... 27 9.6
Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF098993-3|AAC67464.2| 367|Caenorhabditis elegans Hypothetical ... 27 9.6
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 261 bits (640), Expect = 2e-70
Identities = 113/135 (83%), Positives = 129/135 (95%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 352
M+TP+RRRLMRDFK+LQEDPP GVSGAPT++NI+ W A+IFGP +TPFEDGTFKL++EFT
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 353 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNS 532
EEYPNKPPTV+F+SKMFHPNVYADG ICLDILQNRWSPTYDV+AILTSIQSLL +PNPNS
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 533 PANSMAAQLYKENRR 577
PANS+AAQLY+ENRR
Sbjct: 121 PANSLAAQLYQENRR 135
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 261 bits (640), Expect = 2e-70
Identities = 113/135 (83%), Positives = 129/135 (95%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 352
M+TP+RRRLMRDFK+LQEDPP GVSGAPT++NI+ W A+IFGP +TPFEDGTFKL++EFT
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 353 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNS 532
EEYPNKPPTV+F+SKMFHPNVYADG ICLDILQNRWSPTYDV+AILTSIQSLL +PNPNS
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 533 PANSMAAQLYKENRR 577
PANS+AAQLY+ENRR
Sbjct: 121 PANSLAAQLYQENRR 135
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 134 bits (323), Expect = 6e-32
Identities = 56/130 (43%), Positives = 85/130 (65%)
Frame = +2
Query: 185 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 364
A +R+ ++ + L DPP S P +++ W A I GP ++P++ G F LTI F +YP
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 365 NKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANS 544
KPP V F ++++HPN+ ++G ICLDIL+++WSP +S +L SI SLL DPNP+ P
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 545 MAAQLYKENR 574
A++YK +R
Sbjct: 122 EIARIYKTDR 131
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 134 bits (323), Expect = 6e-32
Identities = 56/130 (43%), Positives = 85/130 (65%)
Frame = +2
Query: 185 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 364
A +R+ ++ + L DPP S P +++ W A I GP ++P++ G F LTI F +YP
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 365 NKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANS 544
KPP V F ++++HPN+ ++G ICLDIL+++WSP +S +L SI SLL DPNP+ P
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 545 MAAQLYKENR 574
A++YK +R
Sbjct: 122 EIARIYKTDR 131
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 127 bits (306), Expect = 6e-30
Identities = 56/127 (44%), Positives = 83/127 (65%)
Frame = +2
Query: 191 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNK 370
RR++++ +RL DP G+S P ++N ++ +I GP D+PF G FKL + EEYP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 371 PPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMA 550
P VRF++K++HPN+ G ICLDIL+++WSP + +L SIQ+LLS PNP P +
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLATDV 126
Query: 551 AQLYKEN 571
A+ +K N
Sbjct: 127 AEQWKTN 133
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 123 bits (296), Expect = 1e-28
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 14/148 (9%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTGVSGAPTD-NNIMIWNAVIFGPHDTPFEDGTFKLTIEF 349
M+ A +RLM ++K L PP G+ AP D +N W +I GP +T F +G F I F
Sbjct: 1 MAGYALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITF 60
Query: 350 TEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-------------QNRWSPTYDVSAIL 490
++YP PP +RF +FHPN+YADG +C+ IL RWSP + IL
Sbjct: 61 PQDYPLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKIL 120
Query: 491 TSIQSLLSDPNPNSPANSMAAQLYKENR 574
S+ S+L++PN SPAN AA++++E+R
Sbjct: 121 LSVVSMLAEPNDESPANVSAAKMWREDR 148
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 112 bits (270), Expect = 1e-25
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
Frame = +2
Query: 164 KIKMSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 343
K S+ A R L + K LQ P G + ++N+ +W I+GP T ++ G FK +I
Sbjct: 4 KASTSSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASI 63
Query: 344 EFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILQN-------------RWSPTYDVSA 484
F YP PP+++F +K++HPNVY +G +C+ IL + RW+PT V
Sbjct: 64 RFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRT 123
Query: 485 ILTSIQSLLSDPNPNSPANSMAAQLYKE 568
IL S+ SLL++PN +SPAN A+ +Y++
Sbjct: 124 ILLSVISLLNEPNTSSPANVDASVMYRK 151
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 106 bits (255), Expect = 1e-23
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 14/149 (9%)
Frame = +2
Query: 167 IKMSTPARRRLMRDFKRLQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 343
++ S+ ++ + D +R+ P G S G DN+I W ++ GP DT +E G FK +
Sbjct: 1 MEQSSLLLKKQLADMRRV---PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAIL 57
Query: 344 EFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-------------QNRWSPTYDVSA 484
+F +YP KPP ++F+S+++HPN+ +G +C+ IL + RW P + V
Sbjct: 58 DFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVET 117
Query: 485 ILTSIQSLLSDPNPNSPANSMAAQLYKEN 571
IL S+ S+L+DPN SPAN AA++ +EN
Sbjct: 118 ILLSVISMLTDPNFESPANVDAAKMQREN 146
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 99 bits (238), Expect = 1e-21
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDN-----NIMIWNAVIFGPHDTPFEDGTFKL 337
MS A RL + K ++D P G P N N+ W I G DT +E G +++
Sbjct: 1 MSGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRI 60
Query: 338 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-QNR-WSPTYDVSAILTSIQSLL 511
+ F +++P+ PP +F +FHPNVY G +CL +L +N+ W P+ + +L IQ LL
Sbjct: 61 RMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLL 120
Query: 512 SDPNPNSPANSMAAQLYKENR 574
+ PN PA + A Q+Y +NR
Sbjct: 121 NHPNIEDPAQAEAYQIYCQNR 141
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 99 bits (238), Expect = 1e-21
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDN-----NIMIWNAVIFGPHDTPFEDGTFKL 337
MS A RL + K ++D P G P N N+ W I G DT +E G +++
Sbjct: 1 MSGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRI 60
Query: 338 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-QNR-WSPTYDVSAILTSIQSLL 511
+ F +++P+ PP +F +FHPNVY G +CL +L +N+ W P+ + +L IQ LL
Sbjct: 61 RMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLL 120
Query: 512 SDPNPNSPANSMAAQLYKENR 574
+ PN PA + A Q+Y +NR
Sbjct: 121 NHPNIEDPAQAEAYQIYCQNR 141
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 97.5 bits (232), Expect = 6e-21
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRL---QEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 343
MS A RL R+ K + E TG+ + N+ I GP DTP+ G F L I
Sbjct: 1 MSNIAFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDI 60
Query: 344 EFTEEYPNKPPTVRFVSKMFHPNVYADGG-ICLDILQNRWSPTYDVSAILTSIQSLLSDP 520
+ ++YP PP V+F +K++HPNV + G ICLDIL+++W+ + + +L SIQ+L+ P
Sbjct: 61 KIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRTVLLSIQALMCTP 120
Query: 521 NPNSPANSMAAQLYKE 568
P P +++ A+ Y E
Sbjct: 121 EPKDPQDAVVAKQYME 136
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/91 (39%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Frame = +2
Query: 296 GPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGICLDILQNRWSPTY 472
GP DT +E+G +++ ++ ++YP K P++ F++K+FHPN+ A G +CLD++ W+ Y
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 473 DVSAIL-TSIQSLLSDPNPNSPANSMAAQLY 562
D++ I T + LL+ PN P N AA+LY
Sbjct: 101 DLTNIFDTFLPQLLTYPNAADPLNGEAARLY 131
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 84.2 bits (199), Expect = 6e-17
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 19/153 (12%)
Frame = +2
Query: 170 KMSTPARRRLMRDFKRL---QEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLT 340
KMS A R+ R K + + G+ +NN+M I GP TP+ GTF++
Sbjct: 14 KMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIK 73
Query: 341 IEFTEEYPNKPPTV---------------RFVSKMFHPNVYADGG-ICLDILQNRWSPTY 472
++ E YP +PP V +FV++++HPN+ + G ICLDIL+++W+ +
Sbjct: 74 VDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASL 133
Query: 473 DVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 571
+ +L S+Q++L P P+ P +++ A+ + N
Sbjct: 134 TLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINN 166
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 81.8 bits (193), Expect = 3e-16
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTG--VSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIE 346
MS A RRLM++ +L+ + P G V T N++ W + G T + F L
Sbjct: 1 MSDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFT 60
Query: 347 FTEEYPNKPPTVRFVSKMF--HPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 514
F +YP P V FV + HP++Y++G ICL IL + W+P V ++ SI S+LS
Sbjct: 61 FGPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLS 118
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 79.8 bits (188), Expect = 1e-15
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 260 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICL 439
+ N++ W ++ P P+ G FK+ I F +YP KPP V F +K++HPNV +G CL
Sbjct: 29 ETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDEEGKFCL 87
Query: 440 DIL-QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRR 577
I+ W P ++ ++ SL+++P P+ P + A+ ++++ +
Sbjct: 88 PIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRADVAEEFQKDHK 134
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 76.6 bits (180), Expect = 1e-14
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +2
Query: 176 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 355
S+ A RRL +D+ +L +DP G+ P ++NI+ W+ + G DTPF G + + F E
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 356 EYPNKPPTVRFVSKMFHPNVYADGGICLDILQ---NRWSPTYDVSAILTSIQSLLSDPNP 526
+P PP + ++ + + +CL I W+P + VSAIL + S + N
Sbjct: 77 NFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM---NE 131
Query: 527 NSPANSMAAQLYKENR 574
NSPA A ++ R
Sbjct: 132 NSPAAGSIAGTPQDQR 147
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 76.6 bits (180), Expect = 1e-14
Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 352
+ST A +RL +D++RL ++P + AP + NI+ W +I G TP+E G + + F
Sbjct: 5 VSTVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFP 64
Query: 353 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQ---NRWSPTYDVSAILTSIQSLLSDPN 523
+++P KPP + ++ + + +CL I + W+P + VS I+T + S ++D
Sbjct: 65 KDFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQ 122
Query: 524 P 526
P
Sbjct: 123 P 123
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 70.5 bits (165), Expect = 8e-13
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +2
Query: 287 VIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYA-DGGICL-DILQNRW 460
+I G +TP+E G F+L I+ E YP K PTV+F++K++HP+V DG ICL D+ W
Sbjct: 384 IIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVW 443
Query: 461 SPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR 574
+ + +L IQS +S+ N P + + NR
Sbjct: 444 PVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNR 481
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 67.3 bits (157), Expect = 7e-12
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Frame = +2
Query: 299 PHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL------QNRW 460
P + + G F+ I EY N PP V+ ++K++HPN+ DG ICL IL Q W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 461 SPTYDVSAILTSIQSLLSD-PNPNSPANSMAAQLYKENR 574
PT +++ ++ + SL +D + N N AAQ++ +NR
Sbjct: 127 RPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNR 165
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 60.9 bits (141), Expect = 6e-10
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Frame = +2
Query: 260 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK-----MFHPNVYAD 424
+ + I +I GP DTP+ +G F+ I F YP PP F++ F+PN+Y D
Sbjct: 439 EGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYND 498
Query: 425 GGICLDIL-------QNRWSPTYDVSAILTSIQSLL 511
G ICL IL + +W+P + +L SIQ ++
Sbjct: 499 GKICLSILGTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +2
Query: 278 WNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL-QN 454
W + GP +P+E G +++++ F ++P PP F + + HPNV G I L +L Q
Sbjct: 71 WICTVPGPRGSPWEGGEYEVSVNF-HKWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQE 129
Query: 455 RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR 574
WS + +L I +LL+ P+ AN A Y+ R
Sbjct: 130 HWSSETSLKKLLREISNLLATPDLTQAANIEAWMEYENQR 169
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 57.2 bits (132), Expect = 8e-09
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Frame = +2
Query: 173 MSTPARRRLMRDFKRLQEDPPTG-VS-GAPTDNNIMI--WNAVIFGPHDTPFEDGTFKLT 340
+ P RL+ + + Q+ G +S G D+++ + W A I GP TP+E + L
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQ 61
Query: 341 IEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC----LDILQNRWSPTYDVSAILTSIQ 502
I+ YP +PPTVRF +K+ V G+ L L+N WS +Y + +L I+
Sbjct: 62 IQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIR 118
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 314 FEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGICLD-ILQNRWSPTYDVSAI 487
+++ F LT++ EYP KPP ++F ++HPNV +C +LQ W P + +
Sbjct: 57 YKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDV 116
Query: 488 LTSIQSLLSDPNPNSPANSMAAQLYKENR 574
L ++ LL++P+ + P N AA Y N+
Sbjct: 117 LLNLIVLLNEPDLSRPVNIDAAHDYIHNK 145
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 47.6 bits (108), Expect = 6e-06
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Frame = +2
Query: 191 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNK 370
RRLM++ L++ P P ++N+ W+ I G T FE G + I F +YP K
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 371 PPTVRFVSKMFHPNVYADGGICLDIL---QNRWSPTYDVSAILTSIQSLLSDPNPNSPAN 541
PP + ++ + + +CL I W P++ + L ++ L P++P
Sbjct: 72 PPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLALIGFL----PSTPGG 125
Query: 542 SMAAQLYKENRR 577
++ + Y R
Sbjct: 126 ALGSLDYPPKER 137
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 42.7 bits (96), Expect = 2e-04
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Frame = +2
Query: 161 LKIKMSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLT 340
LKI + + L +F + P G+ +P+ NN +W VIF F G F+
Sbjct: 12 LKIPGNILKEQALAAEFVEVCRAPIDGIFVSPSANNKFLWFGVIF-VRKGIFGGGIFRFN 70
Query: 341 IEFTEEYPNKPPTVRFV---SKMFHPNVYADG-GICLD-ILQNRW-SPTYDVSAILTSIQ 502
I E+P+ R + S +FHP + +CL+ W + + +L +Q
Sbjct: 71 IHIPLEFPDASDLPRVIFEQSNLFHPLICTKSKELCLNRSFPEGWKKEKHSLRRVLVVLQ 130
Query: 503 -SLLS-DPNPNSPANSMAAQLYKENR 574
S S D + + N A+ LYKE+R
Sbjct: 131 RSFYSYDVDTDKCINPEASVLYKEHR 156
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 185 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTI 343
A +R+ ++ L DPP S +++ W A I GP ++P++ G F LTI
Sbjct: 2 ALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 290 IFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRF 388
I GP DTP+E G F++ + F + YPN P ++F
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKF 67
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +2
Query: 176 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 355
S+ R R K ++ P+G G NN+ W +V D F DG + I
Sbjct: 64 SSENRDGTKRVVKHIRSLEPSGYEGGNEGNNLEAWQSV-QSNQDGVFPDGYDGINIIRNF 122
Query: 356 EYPNKPPTVRFVSKMFHP 409
YP PP+ R + +M P
Sbjct: 123 MYP-PPPSRRHIPEMKPP 139
>Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 281 NAVIFG-PHDTPFEDGTFKLTIEFTEEYPNKPPTVR 385
N FG P D P +GT K +F + + ++PPT +
Sbjct: 90 NKTDFGTPLDLPGMNGTSKAAFKFLDAFTSQPPTTK 125
>Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 281 NAVIFG-PHDTPFEDGTFKLTIEFTEEYPNKPPTVR 385
N FG P D P +GT K +F + + ++PPT +
Sbjct: 90 NKTDFGTPLDLPGMNGTSKAAFKFLDAFTSQPPTTK 125
>Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical
protein F20D1.2 protein.
Length = 641
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 329 MFHLQMEYHEGQISQHSRS*YC 264
+F L ++YH+ QIS H S +C
Sbjct: 154 LFRLLLQYHDPQISNHLESLHC 175
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 578 LVDSPCKAVRPSNLLESLG 522
+ D PCK PSNLL ++G
Sbjct: 114 ICDGPCKKAFPSNLLNTIG 132
>AF025452-9|AAB70946.1| 348|Caenorhabditis elegans Hypothetical
protein B0454.9 protein.
Length = 348
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 416 YADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSP 535
Y + I D + + SPT +S+ LTS Q +D +P P
Sbjct: 191 YENPDIIWDDVADPESPTTSMSSTLTSTQGTFTDYHPEEP 230
>Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical
protein Y41E3.19 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 572 DSPCKAVRPSNLLESLG-WDHLIMT 501
D PC+ PSNLL ++G DH + T
Sbjct: 124 DGPCQREFPSNLLNTIGRCDHYLCT 148
>Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical
protein F35H8.6 protein.
Length = 533
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 211 KIPHQASSCWS*HFDF-QYLSYNTMRFFYF*VGVTLTPLYKNYVLRT 74
++PH S + H +F QY + + FF+F + TL+ +Y Y +RT
Sbjct: 465 EVPHARSG--ADHLNFLQYFLVDVIAFFFFVIFCTLSIIY--YTIRT 507
>AF098993-3|AAC67464.2| 367|Caenorhabditis elegans Hypothetical
protein T10B11.4 protein.
Length = 367
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 572 DSPCKAVRPSNLLESLG-WDHLIMT 501
D PC+ PSNLL ++G DH + T
Sbjct: 127 DGPCQKEFPSNLLNTIGRCDHYLCT 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,482,246
Number of Sequences: 27780
Number of extensions: 324211
Number of successful extensions: 876
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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