Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o06r
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0741 + 6649988-6653065                                           28   6.4  
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535...    28   8.4  

>12_01_0741 + 6649988-6653065
          Length = 1025

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 286 ILFSELFSKII-IRCLSIFVNLYIMFL*NNETIIVNH*VNYKKANSLSIYFVKLT*SAST 462
           +L S  F  I+ +   S   NLY++ L NN+ I+++   N    +  SI F++L  S S 
Sbjct: 460 LLHSNSFVGIVELTSYSKLQNLYVLNLSNNKLIVIDGENNSSLVSYPSISFLRLA-SCSI 518

Query: 463 TSYYN 477
           +S+ N
Sbjct: 519 SSFPN 523


>04_04_1122 +
           31052497-31052629,31053133-31053191,31053285-31053579,
           31054099-31054279,31054739-31054956,31055522-31055739,
           31055842-31055958,31056106-31056128,31056223-31056438,
           31056536-31056677,31056822-31057067,31057659-31057856,
           31058331-31058379,31060835-31060911,31061266-31061551,
           31061661-31061841,31062149-31062344,31062630-31062738,
           31062861-31062961,31063155-31063267,31063347-31063442,
           31063531-31063746,31063857-31063995,31064087-31064332,
           31064605-31064940
          Length = 1396

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 157 KICRRVPIKTNINGVELT 104
           K+C+ VP++T ING E T
Sbjct: 679 KMCKHVPLRTTINGEEKT 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,374,603
Number of Sequences: 37544
Number of extensions: 243412
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)