Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o06f
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.6  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.6  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   8.8  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   8.8  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 328 TTNQKVWGLWSIWLWALTTTYGRLRLWWIMDVFKAV-ITFQY*QYLKKTNIVL 483
           TTN+ + G+W+ W+ +     G  +   +    K + + F++ +YL++TN++L
Sbjct: 562 TTNEII-GVWNQWVVSYNRKVGMQQNADLFFKRKTLRVVFEHWRYLRETNMLL 613


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 179  EKTPFSFMGWFWALLNFFSLLFH 247
            +K P +F  W++A + F + LFH
Sbjct: 1162 KKVPCTFCCWYYAGIIFLNTLFH 1184


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 107 KYISIQGEAEIFNMVYVTGDGT 172
           K + I+G  ++ N+V VTGDGT
Sbjct: 862 KQLLIEGLQKLGNVVAVTGDGT 883


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 425 KTSIIHHSRSLP*VVVRAQSQMDQSPQT 342
           KTSII HS+SLP         + QS QT
Sbjct: 370 KTSIIDHSKSLPVQRASVLPIIKQSSQT 397


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 169 PISCNVNHIEDFCLSLNRNVFID*N 95
           PIS   + I D  LS+NRN F+  N
Sbjct: 409 PISDEADLIRDQLLSMNRNAFLTIN 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,543
Number of Sequences: 5004
Number of extensions: 39910
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)