Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o05r
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   4.4  
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   7.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 402 NYSELKSLLVHSCLKHFKKKND*NHLFIDKSHNLVTD 292
           N  EL+ ++++S  K F K ++ ++LF D++   +TD
Sbjct: 689 NDLELRGIVINSLCKLFTKFSNFDYLFEDRTVTFLTD 725


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 410 SMTTILN*NHYWYIPV*SILKKKTTEIIYLSINHIT*LPI-VIIAEDLFDFLSSSIN 243
           S+ + L  N  +Y P      KK    IY+S+N I  L I   ++ D+ + L +S+N
Sbjct: 46  SLVSKLKGNEAFYKPFLFCCAKKIERHIYISLNSIQLLAINDALSPDILESLFNSLN 102


>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 157 FHTTINNN--YSQSSSLHFKHSKLYKKKGN*LIELDRKSNKSSAII 288
           +H T+ +N  +S S  ++FKH  L  +  + L+++D+  NK++  I
Sbjct: 23  YHDTVVHNLAFSTSDYIYFKH--LTDRNDDALLKVDQTINKTNRFI 66


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 94  DYCRVKIDFFIHSNIKKKKLYFHTTINNNYSQSSSLHFKHSKLYKKKGN*LIELDRKSNK 273
           D    +ID  + ++++K K+    T N++ +    L  K  +L K +GN L ELD   +K
Sbjct: 445 DQLNREIDI-LQNHVEKLKMSLKNT-NSDITGEDVLQQKLKQLAKDRGNLLNELDALKSK 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,967
Number of Sequences: 5004
Number of extensions: 54678
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)