Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o05r
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006768-6|AAO25976.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical
           protein T01G5.4 protein.
          Length = 415

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 647 YRQTNLSEKILYANQGTVFYPQVCYYFLFLQILNKLYV 534
           +RQ  + E IL+ANQ    +  V   FLF  ++N +Y+
Sbjct: 258 FRQNEILELILFANQSLSSFGSVTPLFLFYGLINGVYL 295


>Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.3 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +1

Query: 115 DFFIHSNIKKKKLYFHTTINNNYSQSSSLHFKHSKLYKKKGN*LIELDRKSNKSSAIITI 294
           DFF   N+       + T   +YS S+ + FK  K      N   +L RK+ + S  +T+
Sbjct: 198 DFFAKINVIVHLSLSNFTFIGHYSLSAYMFFKIRKTTSNTSNQTRKLSRKA-ELSLTLTM 256

Query: 295 GN*VM*FIDK*MISVVFFF 351
            + ++ +I   ++S  F F
Sbjct: 257 ASCIIPYITNSIVSYTFLF 275


>AC006768-6|AAO25976.1|  305|Caenorhabditis elegans Hypothetical
           protein Y45G12B.1b protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  IIDLFDYCRVKIDFFIHSNIKKKKLY 156
           I DLF+   VKIDFF   N KK  ++
Sbjct: 280 INDLFELLSVKIDFFFRENQKKNLIF 305


>AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical
           protein Y54E5A.3 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 665 KYFQIFYRQTNLSEKILYANQGTVFYPQVCYYFLFLQILNKLYVQ*SSKTRRKKNRIQRM 486
           K  +I +    + EK+  A Q TVFY  +     FL ++  + +    KTRR +  ++ +
Sbjct: 343 KKVRITFHNLKVDEKVS-AIQNTVFYWALAIAAFFLLLVTAVILMHREKTRRLEKTLKSV 401

Query: 485 N 483
           N
Sbjct: 402 N 402


>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 671 YNKYFQIFYRQTNLSEKILYANQGTVFYPQV 579
           +NKY Q  Y Q N   KI+   +  +FYP +
Sbjct: 565 WNKYNQTHYDQDNPPPKIVQGYKFNIFYPDL 595


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 671 YNKYFQIFYRQTNLSEKILYANQGTVFYPQV 579
           +NKY Q  Y Q N   KI+   +  +FYP +
Sbjct: 565 WNKYNQTHYDQDNPPPKIVQGYKFNIFYPDL 595


>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 483 SINCFKTPLVLKMICICLHFYSNNIHDNYSELKSLL 376
           +I+CFK      +   CL FY++ +H N ++L  +L
Sbjct: 128 NIHCFKFHKFESLKAGCLFFYTDFLHFNSNDLHKML 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,880
Number of Sequences: 27780
Number of extensions: 291281
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)