Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o05r
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = -2

Query: 590 YPQV---CYYFLFLQILNKLYVQ 531
           +PQ+    Y+FL  Q+LN+ Y++
Sbjct: 250 FPQIRGEFYFFLHKQVLNRYYLE 272


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = -2

Query: 590 YPQV---CYYFLFLQILNKLYVQ 531
           +PQ+    Y+FL  Q+LN+ Y++
Sbjct: 250 FPQIRGEFYFFLHKQVLNRYYLE 272


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 95  IIVG*KLTFSSILILKKKNFTSIRQSITIILKVHPCI 205
           I+   +LT  +   ++ +NF   RQS  +IL    CI
Sbjct: 150 ILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSCKCI 186


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 638 TNLSEKILYANQGTVFYPQVCYYFLFLQ 555
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 638 TNLSEKILYANQGTVFYPQVCYYFLFLQ 555
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 638 TNLSEKILYANQGTVFYPQVCYYFLFLQ 555
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 638 TNLSEKILYANQGTVFYPQVCYYFLFLQ 555
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 638 TNLSEKILYANQGTVFYPQVCYYFLFLQ 555
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -2

Query: 686 FNKLSYNKYFQIFYRQTNLSE 624
           +N  +YN Y +++Y   N+ +
Sbjct: 341 YNNNNYNNYKKLYYNIINIEQ 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,794
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)