Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o05f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          31   0.17 
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   5.0  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   6.5  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   8.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 445 VEKTPVVIKTIEEYAPGLVDNVQSYAST 528
           +E+ P+  KTI E  P ++++VQS A+T
Sbjct: 273 IEECPIATKTINEEYPKIIEDVQSRANT 300


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 469 KTIEEYAPGLVD--NVQSYASTAWSGLKKYS--SDYYQITTDYLVTKV 600
           K +EEY  G  D  N++  +S +W   K+Y   S+ Y++  D    K+
Sbjct: 240 KIMEEYK-GKCDSENIEEASSNSWKAFKEYKLPSNVYEVLHDTRCVKI 286


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 487 APGLVDNVQSYASTAWSGLKKYSSDYYQITTDYLV 591
           A G+V+    Y+    +  KKY+ DYY    D +V
Sbjct: 703 AGGVVEATMCYSGDMLNPKKKYNLDYYVNLVDKMV 737


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 110 LEEIPGCGPALFCWSALLVW*LMTCLGLEETSLRVQRESCSKIWAFLSIVNRLGRRH 280
           LE++PGCGP +     + +W      G  + +   Q++  SKI      +  +G  H
Sbjct: 225 LEKMPGCGPKI-----VHLWKEFASTGTLKEAEEFQKDPASKILLLFYNIFGVGASH 276


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 400  LKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYSS---DYYQ 570
            +K+A ++  NV D    ++ +++KT+ E      +N+   ++      K+Y S   DY Q
Sbjct: 1019 MKQAELMTSNVTD----ESQLMLKTLREALQSKTNNIDHLSTILERNRKEYKSLLDDYNQ 1074

Query: 571  ITTDY 585
            +   Y
Sbjct: 1075 LRARY 1079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,494
Number of Sequences: 5004
Number of extensions: 57752
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)