Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o04f
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   316   8e-87
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.6  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   3.4  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   4.5  
Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  316 bits (776), Expect = 8e-87
 Identities = 149/182 (81%), Positives = 168/182 (92%)
 Frame = +2

Query: 59  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 238
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 239 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 418
           E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 419 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQG 598
           HHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG G
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDG 182

Query: 599 GG 604
            G
Sbjct: 183 AG 184


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
 Frame = +2

Query: 167 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 343
           KRE + +  TLA + R+ A  +  L E DP R      +L +    G++      L+ + 
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98

Query: 344 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 523
            +    F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I 
Sbjct: 99  KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158

Query: 524 FSLKS 538
           ++  S
Sbjct: 159 WTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 316 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 486
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 479 CSQLACGHEYAFAGSKFWHDG 417
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 482 GCSQLACGHEYAFAGSKFWH 423
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 377 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 243
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical
           protein F31F6.1 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +2

Query: 149 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 316
           E G       +R  + LAR +   R   TL EKD +++F+   G   ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165

Query: 317 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 436
              K  +   +  E+   R L T V    G    + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 93  VTYVFENTDGTLLFTILASSH 31
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +2

Query: 350 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 475
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +2

Query: 350 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 475
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,906
Number of Sequences: 27780
Number of extensions: 298015
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)