Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o03r
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 33 0.31
03_02_0164 - 6066744-6067637 31 0.73
03_04_0055 + 16891212-16891848,16893166-16893206 30 2.2
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 30 2.2
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 2.9
02_02_0712 + 13200174-13200761,13201966-13202616 29 2.9
08_02_0311 - 15635165-15635590,15635777-15638698 29 3.9
03_03_0094 + 14378953-14380728 29 3.9
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 5.1
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 6.8
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 6.8
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 28 6.8
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 6.8
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 28 9.0
01_06_0397 + 29017608-29018510,29018751-29019083 28 9.0
>05_01_0214 - 1615519-1616775
Length = 418
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 127 DRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 20
D GH G GH G H H G + H+D++H
Sbjct: 183 DHGH-GHGHGHGHGHSHDHDHGGSDHDHHHHEDQEH 217
>03_02_0164 - 6066744-6067637
Length = 297
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -1
Query: 682 CRCCGPHLPGSQ-VRLHGQAHERQRQTPRHVR-----AGQLYVQTGQRKEHHRP*LHGYA 521
C C H P SQ + H AH+R+RQ + V+ A +G HH L GY
Sbjct: 103 CHYCCRHFPTSQALGGHQNAHKRERQHAKRVQMQTAMAAAAAAASGAHHHHHHHQLLGYP 162
Query: 520 RIYPR 506
+ + R
Sbjct: 163 QHHHR 167
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -1
Query: 151 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 14
P + QQ H+ G G H PG G G +DE DE
Sbjct: 175 PPPQQQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHDEDEDEDE 220
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 136 HQQDRGHLGDGHDEGRSHLP----GLGHAGQEDLQRRHDDEQHDE 14
H ++ H + DE + GLG ++DL++ HD E DE
Sbjct: 166 HGMEKDHTKEEKDESNKEMDDSEKGLGKEEKDDLEKDHDKEDRDE 210
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 322 TGADRRHDDVHLHLQTSNRTEG-QHKSLRESVARLAPPVLDHCLAISGRHHFA 477
T A ++ D+HLH+ TS T G + + LR R PV D L+ S R + A
Sbjct: 180 TVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMA 232
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 154 FSVDHYVSELHVVSEEARHVNRSVKWISERHGG 252
++ +HY+ + +R NRSV W+ HGG
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGG 349
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 139 EHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 17
EH + + D +G+ HLPG G G + L R+ + + D
Sbjct: 184 EHYKIGEYADDDPHDGKLHLPGPGGGGNKSLLARNQNGEFD 224
>03_03_0094 + 14378953-14380728
Length = 591
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = -2
Query: 513 IPEYLSTRRVMESEMMPSGDGQTMVKDWWCKSRNGFPQRLMLPLGTIGGLEMQMYVIVSP 334
+ L R + ES+++ + + W + + L + LG + G+ M +
Sbjct: 208 VKRQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQEL-RR 266
Query: 333 VRTGMLLPTLDMTMMKDRCACRWS 262
VR+G+L T +M M D RW+
Sbjct: 267 VRSGILGETDNMVTMHDVMDARWA 290
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 410 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 517
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 157 KRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 14
K RH + DG DE R + H +E+ + RHD + H +
Sbjct: 202 KSKRHHSSENSDSEESDGRDERRKSVQASEHK-REEKRSRHDKKDHGQ 248
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 6.8
Identities = 37/141 (26%), Positives = 46/141 (32%), Gaps = 7/141 (4%)
Frame = +1
Query: 271 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCL 450
T+ H GH C D + D H H +H + +E + L PP DH
Sbjct: 802 TNKHACHDGHNHCADTSNLHDTKKHDCHGH---------EHSTCKEELNAL-PPTNDH-- 849
Query: 451 AISGRHH------FAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQFVHKAVQLEHV-EAF 609
A G H A H T + HIH G D+ H E V E
Sbjct: 850 ACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEPIGSHCADK--HACHDHEQVHEHH 907
Query: 610 VVDAHEPAHAVVLGTQEDADH 672
D + H L D DH
Sbjct: 908 CCDEQQTPHTADLHPCHDHDH 928
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 28.3 bits (60), Expect = 6.8
Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Frame = +1
Query: 265 PATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDH 444
P S VL HV CG H R+ DV + S G H + +SV L
Sbjct: 70 PLESRLVLDVYHVDCGVRHAALVTRNGDVFTWGEDSGGRLG-HGTREDSVHPRLVESLAA 128
Query: 445 C---LAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDG 549
C G H TT W H G G
Sbjct: 129 CNVDFVACGEFHTCAVTTTGELYTWGDGTHNVGLLGHG 166
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 397 SLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKS 519
S + + + VLD + HH A YT S + LW S
Sbjct: 693 SAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQAS 733
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 685 NCRCCGPHLPGSQVRLHGQAHERQRQTPRH 596
+C G HL G+QV Q H R P H
Sbjct: 113 DCIVAGDHLRGAQVAASYQRHVRDNPNPSH 142
>01_06_0397 + 29017608-29018510,29018751-29019083
Length = 411
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 520 LHIHGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEPAHAVVLGTQEDADHSIDSFVGHD 699
+H+H T L +D ++ + + F+ HEP V+ + ADH ID V
Sbjct: 76 MHVHATTS---LKMDMSGSLSIIVGQLLPFL---HEPFRQVLKRLRWTADHEIDR-VNLT 128
Query: 700 IXRHLERMVIE 732
+ R L+R+V E
Sbjct: 129 LGRQLDRIVAE 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,757,794
Number of Sequences: 37544
Number of extensions: 481288
Number of successful extensions: 1606
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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