Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o03r
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.28
AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical ... 30 1.5
U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical pr... 30 2.0
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 2.0
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 2.0
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 30 2.0
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 28 6.0
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 28 6.0
U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 28 6.0
U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 28 6.0
U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 28 6.0
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 28 6.0
Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 28 8.0
U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 28 8.0
U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 28 8.0
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.28
Identities = 32/122 (26%), Positives = 41/122 (33%)
Frame = -1
Query: 400 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*Q 221
E + AP + G+ H G H +A AH GH + G + HH S S
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG-------THHGHHGSHHSPAH 560
Query: 220 TD*HGELLH*QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQR 41
HGE H H H + GH GH H GH G+ +
Sbjct: 561 HGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGH---GHHAPAHH----GHHGEHGVHH 613
Query: 40 RH 35
H
Sbjct: 614 GH 615
Score = 31.1 bits (67), Expect = 0.86
Identities = 31/123 (25%), Positives = 38/123 (30%), Gaps = 8/123 (6%)
Frame = -1
Query: 364 GDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*QTD*HGELLH*QH 185
G+ H G H +A AH GH G + HH+ + H H H
Sbjct: 420 GEHGTHHGHHGEHHHAPAHHGHHESHG---------HGHHSPAHHGHHGEHHHAPAHHGH 470
Query: 184 EVR*RNDLQKRPRHVEHQQDRGHLGD-------GHDEGRSHLPG-LGHAGQEDLQRRHDD 29
+ H EH GH G GH H P GH G+ H
Sbjct: 471 HGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHG 530
Query: 28 EQH 20
E H
Sbjct: 531 EHH 533
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/112 (25%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Frame = +1
Query: 64 HVRVQVGEIVLHHDHLRGVHGLAGVRHA--EVFSVDHYVSELHVVSEEARHVNRSVKWIS 237
H GE HH H G H A H E H+ H E H
Sbjct: 414 HSPAHHGEHGTHHGH-HGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHG 472
Query: 238 ERHGGDT*APATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQH 393
E H HHGH G H+ A H H H + G+H
Sbjct: 473 EHHHAPAHHGHHGEHGTHHGHH--GSHHSPAHHGHHGEHHHAPAHHGHHGEH 522
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Frame = +1
Query: 97 HHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRSVKWISERHGGDT*-APAT 273
HH H G HG H S H+ A H + H G+ APA
Sbjct: 480 HHGH-HGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAH 538
Query: 274 STTVLHHG--HVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKS 399
HG H G H+ A H H H + G H S
Sbjct: 539 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGS 582
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = -1
Query: 151 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 20
P H EH + + H EG H H + + RH E H
Sbjct: 368 PAHHEHHEHKDGAHHEHKEGEHH-EHAAHHDEHGVHHRHHGEHH 410
>AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical
protein Y48A6B.8 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 673 CGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEH 548
C HL QVR + H+R +P V + TGQR EH
Sbjct: 500 CEHHLKWGQVRKFREQHQRMETSPEEV----IRFATGQRNEH 537
>U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical
protein T27F7.1 protein.
Length = 208
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 555 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMPSGDGQTMVKD 433
K+T V SM +PE + T R M +EMM G + M+++
Sbjct: 104 KSTEVMKSMQQLVKVPEIMKTMREMSAEMMKLGIIEEMIEE 144
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -1
Query: 163 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 17
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 348 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 394
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -1
Query: 163 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 17
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 366 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 412
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 246 WWRYMSSSDKHNGPSSWSCPMWARAYR 326
WWRY+ S +H+GP+ WA R
Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRR 146
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 673 CGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEH 548
C HL QVR + H+R +P + + TGQR EH
Sbjct: 500 CEHHLKWGQVRKFREQHQRMETSPEEM----IRFATGQRNEH 537
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -1
Query: 160 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 14
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -1
Query: 655 GSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEHHRP*LHGYARIYPRVPFDSSCNGK 476
G R G R +P G+ Y +G R+E +R LHG R P P G
Sbjct: 529 GDGERKEGFIQPAHRPSPSFRGRGRGYGDSGFRRESYRGGLHGSDRYGPYPPRGGGFRGG 588
Query: 475 R 473
R
Sbjct: 589 R 589
>U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform c protein.
Length = 284
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 555 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 463
+N + ++DM+ F P RR++E++ P
Sbjct: 104 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 134
>U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform b protein.
Length = 290
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 555 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 463
+N + ++DM+ F P RR++E++ P
Sbjct: 110 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 140
>U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 555 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 463
+N + ++DM+ F P RR++E++ P
Sbjct: 183 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 213
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -1
Query: 160 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 14
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical
protein F43C1.2a protein.
Length = 376
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 528 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 427
D GF+ EY++TR E+M + G T D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical
protein F43C1.2b protein.
Length = 444
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 528 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 427
D GF+ EY++TR E+M + G T D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
>U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein.
Length = 376
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 528 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 427
D GF+ EY++TR E+M + G T D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase
protein.
Length = 444
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 528 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 427
D GF+ EY++TR E+M + G T D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,634
Number of Sequences: 27780
Number of extensions: 371904
Number of successful extensions: 1214
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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