Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o01r
         (787 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95740-1|AAC31662.1| 1199|Homo sapiens Unknown gene product prot...    32   2.0  
AL590431-1|CAH71259.1| 1888|Homo sapiens nuclear pore membrane g...    32   2.7  
AL513546-1|CAH70552.1| 1888|Homo sapiens nuclear pore membrane g...    32   2.7  
AL358472-1|CAI14015.1| 1888|Homo sapiens nuclear pore membrane g...    32   2.7  
AK128000-1|BAC87225.1|  569|Homo sapiens protein ( Homo sapiens ...    32   2.7  
BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.       31   3.6  

>U95740-1|AAC31662.1| 1199|Homo sapiens Unknown gene product protein.
          Length = 1199

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 361  FFIYCFFRVSVFIYFAVIFVLNV*FPVLRNDDVNY**KL*KAYL 492
            FFI+ F +  VF++F V+FV  +   V  ND +    KL   YL
Sbjct: 898  FFIFVFVQFVVFVFFIVVFVFFIVVFVFTNDKMEECVKLTSLYL 941


>AL590431-1|CAH71259.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 17  CYNWHSQHNSIINIIRTYKNGKL 85
           CY WHS H+  + +   Y+NG L
Sbjct: 65  CYTWHSTHHDAVTVEPLYENGTL 87


>AL513546-1|CAH70552.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 17  CYNWHSQHNSIINIIRTYKNGKL 85
           CY WHS H+  + +   Y+NG L
Sbjct: 65  CYTWHSTHHDAVTVEPLYENGTL 87


>AL358472-1|CAI14015.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 17  CYNWHSQHNSIINIIRTYKNGKL 85
           CY WHS H+  + +   Y+NG L
Sbjct: 65  CYTWHSTHHDAVTVEPLYENGTL 87


>AK128000-1|BAC87225.1|  569|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46118 fis, clone TESTI2037657, weakly  similar
           to Integral membrane glycoprotein gp210 precursor. ).
          Length = 569

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 17  CYNWHSQHNSIINIIRTYKNGKL 85
           CY WHS H+  + +   Y+NG L
Sbjct: 65  CYTWHSTHHDAVTVEPLYENGTL 87


>BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.
          Length = 75

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 331 HICIMTKYLCFFIYCFFRVSVFIY 402
           HIC+   Y+C +IY + R+ V+IY
Sbjct: 46  HICVYI-YMCVYIYTYIRIYVYIY 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,592,813
Number of Sequences: 237096
Number of extensions: 1674130
Number of successful extensions: 6661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6659
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)