Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o01f
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 31 0.19
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.25
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 0.99
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.3
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 27 1.7
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.0
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.0
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 3.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.0
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.3
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.3
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.3
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 5.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.0
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 7.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 7.0
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 7.0
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 7.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.0
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.0
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.2
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 9.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.2
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 30.7 bits (66), Expect = 0.19
Identities = 31/123 (25%), Positives = 50/123 (40%)
Frame = +2
Query: 53 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 232
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 233 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 412
+KS+ D + +S + T T NP + I L+ L H
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140
Query: 413 TET 421
T T
Sbjct: 141 TPT 143
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +1
Query: 286 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 450
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 0.99
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 119 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 277
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 278 DSSQ 289
SSQ
Sbjct: 488 SSSQ 491
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = +2
Query: 185 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 364
VD ++K+ S ED++ E + +L G E + SSQ + + E P P E EK
Sbjct: 145 VDEDDKL---SEEDLSKEDLETTL-KGDENYSSSQKEIYDNDETIPKPP----SPEVEKI 196
Query: 365 KFLNGIENFDPTKLKHTETCEKNPLPTKDVI 457
+ +EN T ++ +T + T D+I
Sbjct: 197 ETSTSVENAYITNSQYNDTLDMED-QTSDLI 226
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 215 SAEDVATEKTQ--KSLF-DGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 358
++EDVA+++T+ K++F DG+ K ++ T ++K D+DA A E
Sbjct: 22 ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 320 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 439
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 344 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 475
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 237 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 106
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 442 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 582
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 104 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 271
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 272 KFDSSQLKHTETQEK 316
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 293 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPLPTKDVIE 460
+H E+ E P+ ++ + EKEK+ + +E+ P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 461 QEKSA 475
+++ A
Sbjct: 861 KDRYA 865
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 269 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 448
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 449 DVIEQEK 469
+ + EK
Sbjct: 132 ETVASEK 138
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 203 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 331
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 244 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 140
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 146 SQLEGFNTSCLR-DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK-N 319
S ++ F + L + + +K V+ + E ++ LF ++ +++ T+E N
Sbjct: 400 SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLN 459
Query: 320 PLPDKDAIEAEKEKNKFLNGIENFDP 397
P+ D ++ + EK + N E DP
Sbjct: 460 PIADDKSLLFDLEKLRLNNDEEKLDP 485
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 353 KEKNKFLNGIENFDPTKLKHTETCEKN 433
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 246 WVFSVATSSADGSTIFSLVSTSRRQL 169
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 246 WVFSVATSSADGSTIFSLVSTSRRQL 169
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 209 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 304
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 246 WVFSVATSSADGSTIFSLVSTSRRQL 169
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 15 PTESLSARIFYPLPHQKYIDSQWPAP*VTLP 107
P +SA F P+P+ Y D+ + A V P
Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 245 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 331
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 185 VDTNEKIVLPSAEDVATEKTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 361
VD + S + T+ Q + G+E + H T +N LP+ E E +K
Sbjct: 353 VDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNSLPNNTTKELEMKK 412
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 246 WVFSVATSSADGSTIFSLVSTSRRQL 169
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 249 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 151
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 26 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 205
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 206 VLPSAEDVATEKT 244
+LP+A+DV+++ +
Sbjct: 784 ILPNADDVSSKNS 796
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 98 DTPSLKDLPKVATDLKSQL--EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 271
D P+ D+ V T+L++ + + + R + +E + T + + + + I+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 272 KFDSSQLKHTETQEKNPL 325
K DSSQ+ + K+PL
Sbjct: 62 KVDSSQILNDNGSHKSPL 79
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 215 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 361
S++ AT+ + + + +DSS ++ K P+ + E+E E+
Sbjct: 112 SSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEE 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,103
Number of Sequences: 5004
Number of extensions: 52127
Number of successful extensions: 214
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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