Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11o01f
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 0.58
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 31 0.77
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 31 1.0
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 2.4
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.1
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 3.1
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.1
06_03_0355 + 19822110-19824491 29 4.1
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418... 28 5.4
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 5.4
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.2
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.2
01_06_0241 - 27813076-27813622,27813695-27814125 28 7.2
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 9.5
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 9.5
03_02_0908 - 12308192-12308431,12309481-12309693 27 9.5
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 31.5 bits (68), Expect = 0.58
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Frame = +2
Query: 113 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 292
K L V LKS+++ +++ K+ + E K ++SL +E SSQ
Sbjct: 1426 KKLNDVEASLKSEIDRHRKI---NINIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQK 1482
Query: 293 KHTETQEKNPLPDKD--------AIEAEKEKNK------------FLNGIENFDPTKLKH 412
TE + + +KD +E E++ NK F I+N + + +
Sbjct: 1483 TTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQV 1542
Query: 413 TETCEKNPLPTKDVIE 460
E+ EK+ K+VIE
Sbjct: 1543 EESIEKHRQAVKEVIE 1558
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 31.1 bits (67), Expect = 0.77
Identities = 25/94 (26%), Positives = 45/94 (47%)
Frame = +1
Query: 319 PASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHYFITV 498
PA G R Y S + +P REL + A A+ ++R+E A H + +++
Sbjct: 492 PAWG-RAYIS-TARRVVPSVPRELEEYIATAYSSIRQEEAKSNAPH---SYTTIRTLLSI 546
Query: 499 TRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYN 600
R I+L F+ V+Q D+ L+++ + Y+
Sbjct: 547 LRISIALARLRFSETVAQSDVDEALRLMQMSKYS 580
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 30.7 bits (66), Expect = 1.0
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 89 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI 268
S S TP+ KDLP L ++ G + + ++ LP++ A + G
Sbjct: 145 SPSPTPT-KDLPCKPVALNARKAG---GAFQPFEKEKRAELPASSTTAAASSTVVGDSGD 200
Query: 269 EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 358
+ D KH ET + N DKDA + +KE
Sbjct: 201 KPTDDDTEKHMETDKDN---DKDAKDKDKE 227
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 137 DLKSQLEGFNTSCLRDVDTNEKIVL 211
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 15 PTESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 194
P SL R+ P P I +++PAP PP ++S R+P SSK P P
Sbjct: 641 PPPSLPNRLVPP-PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPP 699
Query: 195 MKR 203
R
Sbjct: 700 ANR 702
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 144 RVSSKASTPAVSVTSTPMKRLCFR 215
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 200 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 319
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 99 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 191
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 176 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 346
+ +V +++LP+ E+VATE + +E D+ L T +E +P+ D E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 347 AEKEKNKFLNGI 382
A+ ++ G+
Sbjct: 262 ADGDEENDATGL 273
>05_01_0501 -
4184932-4185048,4185360-4185456,4185537-4185709,
4186225-4186305,4186959-4187072,4187177-4187497
Length = 300
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/58 (36%), Positives = 24/58 (41%)
Frame = -1
Query: 443 WGAGSSRTFPCASA*WDRSSRCRSGICSFPSPLR*HLCPEAGSSPESRCASAGSNQTS 270
W A SS P A A R R+ P P R L A SS S A++ SN S
Sbjct: 3 WAALSSPPAPAAPAAVWMGRRARTARLPSPGPRRVVLAAAASSSSPSPDANSSSNSNS 60
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 329 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRLQQTEAQSFHWCRRHGDS 171
P++ SSP AS+ S R R ++SGS + + + H + G S
Sbjct: 33 PDSASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSGRS 85
Score = 27.5 bits (58), Expect = 9.5
Identities = 29/97 (29%), Positives = 36/97 (37%)
Frame = +1
Query: 103 SLPERPPQGRHRPEESARRLQHQLSP*RRHQ*KDCASVC*RRRH*EDPEVFIRRYREV*F 282
S P R P R R S + + S RRH+ S RR +D + RR R
Sbjct: 45 SSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSGRSRRSRDDDDERRRRRR---- 100
Query: 283 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELR 393
RD G SG G E+ P+R E R
Sbjct: 101 -----RRDEERGRRGGDASESSGSGSEE-PDRAEEAR 131
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 113 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 205
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 113 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 205
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 283 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 447
EP H + ++ R +R+ ++ + HR RS H A + V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 267 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 163
+PSN+ + ++ TSS++GS FSL +++ + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 320 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 412
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
>03_02_0908 - 12308192-12308431,12309481-12309693
Length = 150
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 227 VATEKTQKSLFDGIE-----KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENF 391
V T++ K L+D + K +S + + ++++PL + ++N+F+NGI F
Sbjct: 72 VHTKRRNKLLYDRMRDIVFVKLNSKLINKRDNKDRDPLEKEVNDAVSNDENEFINGIVPF 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,116,659
Number of Sequences: 37544
Number of extensions: 374025
Number of successful extensions: 1241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -