Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11o01f
         (638 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    27   0.50 
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   0.88 
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        26   1.2  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      25   2.0  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   2.0  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    23   6.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   8.2  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 27.1 bits (57), Expect = 0.50
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 629 YVAIAQAVLPLYKNKNKTCNGRRKSI*LTSILKYGD 522
           Y+ + QAVLPL KN N  CN  R+SI L  I++  D
Sbjct: 536 YIVLVQAVLPLDKNLN-DCN--RQSI-LGRIIRVTD 567


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 637 GCCTSPLPRQCCH 599
           G C  P PR+CCH
Sbjct: 191 GRCFGPKPRECCH 203


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -1

Query: 329 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRLQ---QTEAQSFHWCRRHGD 174
           P    S    C      +  R  R++     Q R+     QT +Q+ HW + HGD
Sbjct: 182 PRVLESAAKFCEVLKGREMQRQFRLEQEQLQQMRKQSVDTQTLSQANHWLKSHGD 236


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 407 KHTETCEKNPLPTKDVIEQEKS 472
           K+T TCE   LP +DV+  + S
Sbjct: 477 KNTTTCEDYALPYQDVVPSDPS 498


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 499 TRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYN 600
           TR C+  +     +D S   + R +Q L ++LYN
Sbjct: 133 TRLCLPQIFNNILMDFSVEQINRSIQELMIYLYN 166


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 236 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNG 379
           E+T+KSL + +E    ++      + +N    ++A +A++ KN   +G
Sbjct: 148 ERTEKSLKEALEGCSQTETPVNGKRGRNLRSTEEADDAKRAKNDAPSG 195


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 421 RFRVLQLSGIEVLDAVQEFVLFLLRFDS 338
           R ++  L  +E+++ +Q+F  F   FD+
Sbjct: 7   RVKMFNLKRVEIMNTLQDFEEFTKSFDA 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,797
Number of Sequences: 2352
Number of extensions: 13170
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)