Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n20r
(758 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous ... 30 3.9
X62636-1|CAA44502.1| 326|Drosophila melanogaster hrp36.1 protein. 29 5.2
X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein. 29 5.2
X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP pro... 29 6.9
BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p pro... 29 6.9
AY061421-1|AAL28969.1| 300|Drosophila melanogaster LD35248p pro... 29 6.9
AF182826-1|AAF01031.1| 300|Drosophila melanogaster cyclophilin-... 29 6.9
AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-P... 29 6.9
AE014297-1715|AAN13574.1| 325|Drosophila melanogaster CG12749-P... 29 6.9
AE013599-2502|AAF57839.1| 300|Drosophila melanogaster CG4886-PA... 29 6.9
AY865067-2|AAW79466.1| 632|Drosophila melanogaster SR-CI protein. 29 9.1
AY865066-2|AAW79464.1| 632|Drosophila melanogaster SR-CI protein. 29 9.1
AY865062-2|AAW79456.1| 632|Drosophila melanogaster SR-CI protein. 29 9.1
AY864368-1|AAX38006.1| 575|Drosophila melanogaster scavenger re... 29 9.1
AY349704-1|AAQ75563.1| 601|Drosophila melanogaster Sr-CI protein. 29 9.1
AY349701-1|AAQ75560.1| 601|Drosophila melanogaster Sr-CI protein. 29 9.1
AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p pro... 29 9.1
AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA... 29 9.1
>X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous
nuclear ribonucleoproteinprotein.
Length = 386
Score = 29.9 bits (64), Expect = 3.9
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G+ G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGRGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGTGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>X62636-1|CAA44502.1| 326|Drosophila melanogaster hrp36.1 protein.
Length = 326
Score = 29.5 bits (63), Expect = 5.2
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein.
Length = 386
Score = 29.5 bits (63), Expect = 5.2
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP
protein) protein.
Length = 386
Score = 29.1 bits (62), Expect = 6.9
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGTGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p
protein.
Length = 385
Score = 29.1 bits (62), Expect = 6.9
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G + N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGYG-GGNSNGSWGG 305
>AY061421-1|AAL28969.1| 300|Drosophila melanogaster LD35248p
protein.
Length = 300
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 566 NDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTN 444
N++G GK+ Y ++ FND+ L ++GT + G +TN
Sbjct: 204 NNNGTGGKSIYGKK-FNDENFNLKHNSFGTLSMANSGANTN 243
>AF182826-1|AAF01031.1| 300|Drosophila melanogaster cyclophilin-33
protein.
Length = 300
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 566 NDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTN 444
N++G GK+ Y ++ FND+ L ++GT + G +TN
Sbjct: 204 NNNGTGGKSIYGKK-FNDENFNLKHNSFGTLSMANSGANTN 243
>AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-PA,
isoform A protein.
Length = 385
Score = 29.1 bits (62), Expect = 6.9
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G + N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGYG-GGNSNGSWGG 305
>AE014297-1715|AAN13574.1| 325|Drosophila melanogaster CG12749-PB,
isoform B protein.
Length = 325
Score = 29.1 bits (62), Expect = 6.9
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 426
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 425 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 300
W + N Q GG G G G + N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGYG-GGNSNGSWGG 305
>AE013599-2502|AAF57839.1| 300|Drosophila melanogaster CG4886-PA
protein.
Length = 300
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 566 NDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTN 444
N++G GK+ Y ++ FND+ L ++GT + G +TN
Sbjct: 204 NNNGTGGKSIYGKK-FNDENFNLKHNSFGTLSMANSGANTN 243
>AY865067-2|AAW79466.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 9.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -2
Query: 622 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 443
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 433 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 489
Query: 442 TVDVWTGPTRTHKLPLT*TDKS 377
T++V+T T +P + T+K+
Sbjct: 490 TINVFTTKKTTIMIPTSSTEKT 511
>AY865066-2|AAW79464.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 9.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -2
Query: 622 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 443
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 433 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 489
Query: 442 TVDVWTGPTRTHKLPLT*TDKS 377
T++V+T T +P + T+K+
Sbjct: 490 TINVFTTKKTTIMIPTSSTEKT 511
>AY865062-2|AAW79456.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 9.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -2
Query: 622 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 443
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 433 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 489
Query: 442 TVDVWTGPTRTHKLPLT*TDKS 377
T++V+T T +P + T+K+
Sbjct: 490 TINVFTTKKTTIMIPTSSTEKT 511
>AY864368-1|AAX38006.1| 575|Drosophila melanogaster scavenger
receptor protein.
Length = 575
Score = 28.7 bits (61), Expect = 9.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -2
Query: 622 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 443
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 376 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 432
Query: 442 TVDVWTGPTRTHKLPLT*TDKS 377
T++V+T T +P + T+K+
Sbjct: 433 TINVFTTKKTTIMIPTSSTEKT 454
>AY349704-1|AAQ75563.1| 601|Drosophila melanogaster Sr-CI protein.
Length = 601
Score = 28.7 bits (61), Expect = 9.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -2
Query: 622 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 443
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 432 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 488
Query: 442 TVDVWTGPTRTHKLPLT*TDKS 377
T++V+T T +P + T+K+
Sbjct: 489 TINVFTTKKTTIMIPTSSTEKT 510
>AY349701-1|AAQ75560.1| 601|Drosophila melanogaster Sr-CI protein.
Length = 601
Score = 28.7 bits (61), Expect = 9.1
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -2
Query: 622 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 443
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 432 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 488
Query: 442 TVDVWTGPTRTHKLPLT*TDKS 377
T++V+T T +P + T+K+
Sbjct: 489 TINVFTTKKTTIMIPTSSTEKT 510
>AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p protein.
Length = 1711
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 283 NSFETIPPAEMWVFLSRSHTPE--PEAVIPDLPPICLFMSMA 402
N F +IP AE VF + P A PD PP LF S A
Sbjct: 1386 NIFGSIPKAETSVFGGATTAPSNTTAAATPDAPPAGLFASAA 1427
>AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA
protein.
Length = 1711
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 283 NSFETIPPAEMWVFLSRSHTPE--PEAVIPDLPPICLFMSMA 402
N F +IP AE VF + P A PD PP LF S A
Sbjct: 1386 NIFGSIPKAETSVFGGATTAPSNTTAAATPDAPPAGLFASAA 1427
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,665,987
Number of Sequences: 53049
Number of extensions: 907651
Number of successful extensions: 2299
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2293
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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