Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n20r
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 31 0.67
AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical ... 30 1.6
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 2.7
AL110484-10|CAB54401.1| 237|Caenorhabditis elegans Hypothetical... 29 4.7
Z92790-5|CAI79208.1| 169|Caenorhabditis elegans Hypothetical pr... 28 8.3
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 28 8.3
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 28 8.3
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 28 8.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.3
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 27 LSTXLFVTLKKQVISKTYFVNNIDIFLKQSKITFYTSNCKIYTEANSSFFGERQ 188
L+T L + I+ T V+NI+ S FYT+ +++ E SSF G Q
Sbjct: 381 LATNLRYEIPTAYINGTSIVHNINSMGIPSNTNFYTNPIRVHLEVKSSFTGSIQ 434
>AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical
protein Y37H2C.4 protein.
Length = 283
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 90 NIDIFLKQSKITFYTSNCKIYTEANSSFFGERQTNIIL*MMGLC*QSPLMPDLCLKTNVW 269
++DIF++ S TF +S C + + N S FG T ++L + C S + C +
Sbjct: 13 SLDIFVEPSVRTFQSS-CYLVQDLNKSRFGHDITLVLLTVYSSCYGSSMSVFACHFIYRY 71
Query: 270 SSVT-KFLRDHTAG*DVGVLIKIP 338
+V F++ + +G G L P
Sbjct: 72 GAVNINFMQKYISGVKQGFLYLAP 95
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -1
Query: 572 GQNDDGLFG--KAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAA 399
GQN + G + GY D G Q G V G GG S +YG + + Q
Sbjct: 69 GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127
Query: 398 IDINRQIGGRSGMTASGS 345
N G SG ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/86 (30%), Positives = 30/86 (34%)
Frame = -1
Query: 599 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWA 420
GGG G G DG +G G+ G + G YG +G GG YGG D
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGD-G 221
Query: 419 NKNAQAAIDINRQIGGRSGMTASGSG 342
GG GM G G
Sbjct: 222 GYGPSGGYGGGYGPGGGYGMGGGGGG 247
>AL110484-10|CAB54401.1| 237|Caenorhabditis elegans Hypothetical
protein Y38E10A.10 protein.
Length = 237
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 656 IRGLF-SKRHPRDVTWDTRMGGGKVFGTLGQNDD 558
+ GL+ + R +D+ +T G KVF G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188
>Z92790-5|CAI79208.1| 169|Caenorhabditis elegans Hypothetical
protein H03G16.6 protein.
Length = 169
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 527 LCCNRLYRIVHRRSVPKCRRPSLLPFSCPT 616
LC N Y++ PK R+ +L+P S PT
Sbjct: 86 LCTNMSYQLQKMVVFPKVRKEALMPTSSPT 115
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 473 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 583
P C GR+A+ GHH L C + R+V +++ PKC+
Sbjct: 36 PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 473 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 583
P C GR+A+ GHH L C + R+V +++ PKC+
Sbjct: 36 PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 473 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 583
P C GR+A+ GHH L C + R+V +++ PKC+
Sbjct: 36 PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 491 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 342
Q +G G GG+ N GG +N Q + N GG G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 491 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 342
Q +G G GG+ N GG +N Q + N GG G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 491 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 342
Q +G G GG+ N GG +N Q + N GG G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,131
Number of Sequences: 27780
Number of extensions: 453838
Number of successful extensions: 1173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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