Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n20f
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 34 0.10
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 33 0.23
01_06_0513 - 29944888-29945943 33 0.23
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 31 0.94
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 31 0.94
05_03_0164 - 9078814-9079908 28 5.0
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 6.7
04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764... 27 8.8
01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279... 27 8.8
01_06_0507 - 29893563-29894470,29895227-29895419 27 8.8
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 53 LLFFIATVLVCVNAE-VYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVF 208
++ I VL CV +Y + E+ YPI+G +S+ +T+D R+ K+F
Sbjct: 461 VVMLILVVLTCVGTHYIYGGNGAEEPYPIKGKYSQFTLLTMTYDARLWNLKMF 513
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 527 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 435
R++ CD PS R RL C CSYQ +SPR
Sbjct: 29 RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61
>01_06_0513 - 29944888-29945943
Length = 351
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 66 SPQSWCV*TQKYT-GLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWD 221
SP+S T +Y G + P+ A + P +RGT EW EG + AL D
Sbjct: 57 SPRSKRRRTDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLD 109
>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 30.7 bits (66), Expect = 0.94
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Frame = +2
Query: 251 GYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDW--ANKNAQAAIDINRQIG--- 415
G E+ D R +L G+ + G G+ GG A +A + + +
Sbjct: 1073 GNELELAGDHREELGGRGDELELAGDHGEELGGGGTSSSSPATTGRRAMEETSSSLPAAL 1132
Query: 416 GRSGMTASGSGVWD---LDKNTHISAGGMVSKE-FGHRRPDVGLQAEIRH 553
G G T SG G WD L+ + GG + G RR +GL + I H
Sbjct: 1133 GTGGGTESGGGAWDELELELADGVRRGGKERRRAAGRRRRALGLGSGIGH 1182
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 47 SKLLFFIATVLVCVNAEVYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVFGTLGQN 226
SK +AT+ + + Y S Y + P+ GL K ++ W TR+ KV G +G
Sbjct: 737 SKREVAVATLGQVIQSTGYVISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGAL 796
Query: 227 D 229
D
Sbjct: 797 D 797
>05_03_0164 - 9078814-9079908
Length = 364
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 317 VLGPGGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGGMV 496
V+G G +++ LD+ + A A + NR+ G ++ G + L N H S G
Sbjct: 85 VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144
Query: 497 SKEFG--HRRPDV 529
+E + PD+
Sbjct: 145 ERELAGVNTNPDI 157
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 191 GGGKVFG-TLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDS-TNYGGRLD 364
G G G T+G +DDG K + + + G+ G A G R G GG N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236
Query: 365 WANK 376
+K
Sbjct: 237 PPHK 240
>04_04_0841 -
28574497-28574883,28575815-28576188,28576262-28576439,
28576816-28576896,28578134-28578361,28578460-28578579,
28578646-28579353,28579471-28579588,28579686-28579978,
28580101-28580169
Length = 851
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 581 DGIVLTITTHAGSLLEDQRLVFCDQIPSRPYRRLRCGCSYQD 456
DG+ + A L+ DQ + + RRL GC QD
Sbjct: 464 DGVWAVVDVSADELMRDQGITSASSTANMNCRRLPSGCVLQD 505
>01_06_0791 -
32026086-32026944,32027044-32027600,32027686-32027903,
32028171-32028261
Length = 574
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 158 HPRDVTWDTRMGGGKVFGT 214
+PR +T R+GGG VFGT
Sbjct: 405 NPRGLTMKQRIGGGLVFGT 423
>01_06_0507 - 29893563-29894470,29895227-29895419
Length = 366
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -2
Query: 350 RS*CC--HLRVLRPWCRKPGRLADRG 279
RS C H R LRP+ R+P R+A RG
Sbjct: 103 RSGACERHQRRLRPFARRPVRMATRG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,180
Number of Sequences: 37544
Number of extensions: 471802
Number of successful extensions: 1161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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