Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n20f
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.73 
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             30   1.3  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   1.7  
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          29   2.9  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)                      29   3.9  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               28   5.1  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   5.1  
SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)                   28   6.8  
SB_12445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)                27   9.0  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_36689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 32/110 (29%), Positives = 43/110 (39%)
 Frame = +2

Query: 182 TRMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRL 361
           T+ G G  FGT      GLFG AG N        G +TG  +G         ST +GG  
Sbjct: 47  TQTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFG 103

Query: 362 DWANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGGMVSKEFG 511
             A  N       N    G    T +G+G++   +    + GG  +  FG
Sbjct: 104 STAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGA--AFGGTSTSGFG 146


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
 Frame = +2

Query: 32   QLKMNSKLLFFIATVLVCVNAEVYRSSDYEK-----EYPIRGLFSKRHPRDVTWDTRMGG 196
            +++++ + ++F A   VC   +V +   + K     +  + GL   R      W TR+  
Sbjct: 1043 KVQVDDENVWFTAKDGVCFAHDVCKRGAFVKFAKDSQAKLSGLDILRQMESAGWKTRLAA 1102

Query: 197  GKVFGTLGQNDDGLFGKAGYNREIFNDDRGQL--TGQAYGTRVLGPGGDSTNYGGRLDWA 370
              V  +   +   LF KA  N ++ +DD   L  T +  G  V+     ST+  G L   
Sbjct: 1103 IGVTRSPVTSQQALFAKAAVNAQLQSDDGKALRVTMETDGDLVV-----STDCLGEL--- 1154

Query: 371  NKNAQAAIDINRQIGGRSGMTASG--SGVWDLDKNT-HISA-GGMVSKEFGHRRPDVGLQ 538
              + +    +N  + G+  +TAS   +G    D+NT H++  G  V K+    R + G+Q
Sbjct: 1155 -LDRRFTCKVNGSMTGKLTLTASMQIAGAPKGDQNTVHVTGDGAAVDKKTDQCRHNKGIQ 1213

Query: 539  AEIR 550
              +R
Sbjct: 1214 FTLR 1217


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 135 SEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMT 281
           S+    ++TP+ +     WEEG +S  +DRT  +++   +T+E  S+ T
Sbjct: 5   SDYIADANTPLRAGNESFWEEGNTSFKFDRTREEFN-SSITSEESSIET 52


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 468 TPTSQPAVWSR---RNLVTEDQTLVFKQRSGMSGDCQHNPIIH 587
           TP +QP++W R    N  T   TL F+Q++G SG     P  H
Sbjct: 295 TPQTQPSMWQRTSASNTATVSSTL-FQQQTGGSGHTSAWPYAH 336


>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 62  FIATVLVCVNAEVYRSSDYEKEYPIRGLFSK 154
           F   + VC+ A V   +DY+KE   RGL SK
Sbjct: 145 FAILIAVCIVALVTAVNDYQKEQQFRGLQSK 175


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 266 SLCCNRLYRIVHRRSVPKCRRPSLLPFSCPT*RH 165
           S+ CNR+   V+ R    CR P+L     PT +H
Sbjct: 390 SMSCNRVLYFVYSRLTKGCREPALRVRDKPTCKH 423


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 90  TQKYTGLLIMKKNTPSEAYFQSDTP---VTSRGTREWEEGRSS 209
           TQ+   +   KK+   +AYF+S TP    + R    W+E  +S
Sbjct: 187 TQQNASISEQKKSKKKDAYFRSQTPDYFKSDRANNSWDEPEAS 229


>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
          Length = 356

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 584 NDGIVLTITTHAGSLLEDQRLVFCDQIPSRPYRRLRCGCSYQDPTHR 444
           +DG++L +T  +    ED +       P +P++R   G  YQ  THR
Sbjct: 211 DDGLMLNLTNFS---TEDTKKSAIRTGPKKPFKRKEKGNDYQKSTHR 254


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/85 (22%), Positives = 33/85 (38%)
 Frame = +3

Query: 153 SDTPVTSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPE 332
           S +  T+  T+      ++ L   TT   +    +T + +   + S     T P +   +
Sbjct: 442 SQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTSTTK 501

Query: 333 VTALTTVDVWTGPTRTHKLPLT*TD 407
            T  T V+  T P  T   P T T+
Sbjct: 502 ATTSTAVEATTSPAATETAPPTTTE 526


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 63  SSPQSWCV*TQKYTGLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMD 236
           ++P S  + T K + L     +TPS +     TP+ S+ +  W+  R+  L +R+  +
Sbjct: 193 ATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPSTTWKVFRTKVLLERSVKE 250


>SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)
          Length = 571

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 380 RSCWP-SPDVHRS*CCHLRVLRPWCRK 303
           + CW   PD  RS   HLRV RP C K
Sbjct: 166 KQCWTHEPDYDRS--LHLRVFRPVCTK 190


>SB_12445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 77  LVCVNAEVYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVFGTLGQNDDGLFGKAG 253
           LVC+  EV  S DY          ++ HP   + D  +G G    ++G   D   G  G
Sbjct: 121 LVCMLQEVNSSDDYPSHNRADNYGNEHHPSHNSGDASVGDGD-DASVGDGGDASVGDGG 178


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 194 GGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWAN 373
           G  ++   G NDD  FG +G   + FNDD     G   G         + NY   ++  N
Sbjct: 314 GHGLYSNDGNNDDAHFGDSG-RHDNFNDDISN-DGNLNGGGANNNNNKNNNYNSGINNNN 371

Query: 374 KN 379
            N
Sbjct: 372 NN 373


>SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)
          Length = 206

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 203 VFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPG 331
           VFG+ GQ    LF  +       N+ +  L G  +GT  LG G
Sbjct: 85  VFGSTGQPGGSLFVASSPGSGFGNNSQPGLFGTGFGTSQLGQG 127


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 128 ILFHNQKTC-ILLRLHTPGLW 69
           I+   Q+TC + LRLHT G+W
Sbjct: 11  IIASRQRTCGVTLRLHTEGVW 31


>SB_36689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 452 THRSPRLSSQICLRFVCLC 396
           T  SP+LS  +C+  VCLC
Sbjct: 216 TFASPKLSRGVCIATVCLC 234


>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 356 RLDWANKNAQAAIDINRQIGGRSGMTASGSGVWDLDK 466
           ++D  NK+A++  D   ++G   G    GSG W  +K
Sbjct: 493 KIDPKNKDAKSKQDSKLKLGSNKGDKGKGSGSWLANK 529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,340,472
Number of Sequences: 59808
Number of extensions: 549557
Number of successful extensions: 1251
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)