Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n20f
         (609 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ406936-1|CAC27575.1|  166|Homo sapiens keratin associated prot...    31   2.4  
BC033286-1|AAH33286.1|  305|Homo sapiens SCML4 protein protein.        31   3.2  
AL512592-2|CAI13630.1|  305|Homo sapiens protein ( Human DNA seq...    31   3.2  
AL096816-2|CAI42849.1|  305|Homo sapiens protein ( 00197, novel ...    31   3.2  
AK093571-1|BAC04198.1|  356|Homo sapiens protein ( Homo sapiens ...    31   3.2  
AK074125-1|BAB84951.1|  178|Homo sapiens FLJ00197 protein protein.     31   3.2  
BC117283-1|AAI17284.1|  676|Homo sapiens cancer susceptibility c...    31   4.2  
BC117281-1|AAI17282.1|  676|Homo sapiens cancer susceptibility c...    31   4.2  
BC057795-1|AAH57795.1|  716|Homo sapiens CASC1 protein protein.        31   4.2  
BC047415-1|AAH47415.2|  676|Homo sapiens CASC1 protein protein.        31   4.2  
AY423543-1|AAQ93499.1|  716|Homo sapiens lung adenoma susceptibi...    31   4.2  
AK126902-1|BAC86743.1|  247|Homo sapiens protein ( Homo sapiens ...    29   9.7  

>AJ406936-1|CAC27575.1|  166|Homo sapiens keratin associated protein
           4.4 protein.
          Length = 166

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = -2

Query: 455 PTHRSPRLSSQICLRFVCLCQWQLVRSCWPSPDVHRS*CCHLRVLRPWCRKPGRLADRGH 276
           P+   P+    +C +  C C    V SC   P   ++ CC     RP C        R H
Sbjct: 103 PSCCRPQCCQSVCCQPTCCCPSYCVSSCC-RPQCCQTTCCRTTCCRPSCCV--SRCYRPH 159

Query: 275 H*KSLCC 255
             +SLCC
Sbjct: 160 CGQSLCC 166


>BC033286-1|AAH33286.1|  305|Homo sapiens SCML4 protein protein.
          Length = 305

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 290
           S   +E EEGR  ++   TT +Y V PV   R+S+ T+ S
Sbjct: 185 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 224


>AL512592-2|CAI13630.1|  305|Homo sapiens protein ( Human DNA
           sequence from clone RP11-35D6 on chromosome 6 Contains
           part of a novel gene (FLJ00197).  ).
          Length = 305

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 290
           S   +E EEGR  ++   TT +Y V PV   R+S+ T+ S
Sbjct: 185 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 224


>AL096816-2|CAI42849.1|  305|Homo sapiens protein ( 00197, novel SAM
           domain  ).).
          Length = 305

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 290
           S   +E EEGR  ++   TT +Y V PV   R+S+ T+ S
Sbjct: 185 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 224


>AK093571-1|BAC04198.1|  356|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36252 fis, clone THYMU2002109, moderately
           similar to Homo sapiens Sex comb on midleg homolog 1
           isoform 1. ).
          Length = 356

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 290
           S   +E EEGR  ++   TT +Y V PV   R+S+ T+ S
Sbjct: 156 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 195


>AK074125-1|BAB84951.1|  178|Homo sapiens FLJ00197 protein protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 290
           S   +E EEGR  ++   TT +Y V PV   R+S+ T+ S
Sbjct: 58  SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 97


>BC117283-1|AAI17284.1|  676|Homo sapiens cancer susceptibility
           candidate 1 protein.
          Length = 676

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 492 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 599
           WS+ NL+     +VFK R  ++ +C  NP    +MF
Sbjct: 570 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 605


>BC117281-1|AAI17282.1|  676|Homo sapiens cancer susceptibility
           candidate 1 protein.
          Length = 676

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 492 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 599
           WS+ NL+     +VFK R  ++ +C  NP    +MF
Sbjct: 570 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 605


>BC057795-1|AAH57795.1|  716|Homo sapiens CASC1 protein protein.
          Length = 716

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 492 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 599
           WS+ NL+     +VFK R  ++ +C  NP    +MF
Sbjct: 610 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 645


>BC047415-1|AAH47415.2|  676|Homo sapiens CASC1 protein protein.
          Length = 676

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 492 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 599
           WS+ NL+     +VFK R  ++ +C  NP    +MF
Sbjct: 570 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 605


>AY423543-1|AAQ93499.1|  716|Homo sapiens lung adenoma
           susceptibility 1-like protein protein.
          Length = 716

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 492 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 599
           WS+ NL+     +VFK R  ++ +C  NP    +MF
Sbjct: 610 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 645


>AK126902-1|BAC86743.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44954 fis, clone BRAWH2010364. ).
          Length = 247

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
 Frame = -2

Query: 515 CDQIPSRPYRRLRCG--CSYQDPTHRSPRLS---SQICL--RFVCLCQWQLVRSCWPSPD 357
           C  +   P   L C   CS Q   H SP  S   S  C   R  C C  Q    C P   
Sbjct: 105 CCSLRCSPCCSLHCSPCCSLQCSLHCSPHCSLHCSPCCFLHRSPC-CSLQGSLHCSPCCF 163

Query: 356 VHRS*CCHLR 327
           +HRS CC L+
Sbjct: 164 LHRSPCCSLQ 173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,914,298
Number of Sequences: 237096
Number of extensions: 2554067
Number of successful extensions: 5805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5797
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)