Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n20f
(609 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous ... 30 2.8
X62636-1|CAA44502.1| 326|Drosophila melanogaster hrp36.1 protein. 29 3.8
X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein. 29 3.8
X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP pro... 29 5.0
BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p pro... 29 5.0
AY061421-1|AAL28969.1| 300|Drosophila melanogaster LD35248p pro... 29 5.0
AF182826-1|AAF01031.1| 300|Drosophila melanogaster cyclophilin-... 29 5.0
AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-P... 29 5.0
AE014297-1715|AAN13574.1| 325|Drosophila melanogaster CG12749-P... 29 5.0
AE013599-2502|AAF57839.1| 300|Drosophila melanogaster CG4886-PA... 29 5.0
AY865067-2|AAW79466.1| 632|Drosophila melanogaster SR-CI protein. 29 6.6
AY865066-2|AAW79464.1| 632|Drosophila melanogaster SR-CI protein. 29 6.6
AY865062-2|AAW79456.1| 632|Drosophila melanogaster SR-CI protein. 29 6.6
AY864368-1|AAX38006.1| 575|Drosophila melanogaster scavenger re... 29 6.6
AY349704-1|AAQ75563.1| 601|Drosophila melanogaster Sr-CI protein. 29 6.6
AY349701-1|AAQ75560.1| 601|Drosophila melanogaster Sr-CI protein. 29 6.6
AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p pro... 29 6.6
AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA... 29 6.6
BT029280-1|ABK30917.1| 1191|Drosophila melanogaster IP14007p pro... 28 8.7
AY095186-1|AAM12279.1| 932|Drosophila melanogaster LD21546p pro... 28 8.7
AY071704-1|AAL49326.1| 207|Drosophila melanogaster RH19892p pro... 28 8.7
AY070957-1|AAL48579.1| 207|Drosophila melanogaster RE05806p pro... 28 8.7
AJ459405-1|CAD30676.1| 207|Drosophila melanogaster PYM protein ... 28 8.7
AF293388-1|AAG00610.1| 207|Drosophila melanogaster WIBG protein. 28 8.7
AE014296-2642|AAF49534.1| 1191|Drosophila melanogaster CG12272-P... 28 8.7
AE014134-462|AAF51214.2| 932|Drosophila melanogaster CG2848-PA ... 28 8.7
AE013599-3703|AAM68273.1| 207|Drosophila melanogaster CG30176-P... 28 8.7
>X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous
nuclear ribonucleoproteinprotein.
Length = 386
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G+ G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGRGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGTGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>X62636-1|CAA44502.1| 326|Drosophila melanogaster hrp36.1 protein.
Length = 326
Score = 29.5 bits (63), Expect = 3.8
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein.
Length = 386
Score = 29.5 bits (63), Expect = 3.8
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP
protein) protein.
Length = 386
Score = 29.1 bits (62), Expect = 5.0
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G N++ S GG
Sbjct: 265 WNQQGGTGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306
>BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p
protein.
Length = 385
Score = 29.1 bits (62), Expect = 5.0
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G + N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGYG-GGNSNGSWGG 305
>AY061421-1|AAL28969.1| 300|Drosophila melanogaster LD35248p
protein.
Length = 300
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 224 NDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTN 346
N++G GK+ Y ++ FND+ L ++GT + G +TN
Sbjct: 204 NNNGTGGKSIYGKK-FNDENFNLKHNSFGTLSMANSGANTN 243
>AF182826-1|AAF01031.1| 300|Drosophila melanogaster cyclophilin-33
protein.
Length = 300
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 224 NDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTN 346
N++G GK+ Y ++ FND+ L ++GT + G +TN
Sbjct: 204 NNNGTGGKSIYGKK-FNDENFNLKHNSFGTLSMANSGANTN 243
>AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-PA,
isoform A protein.
Length = 385
Score = 29.1 bits (62), Expect = 5.0
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G + N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGYG-GGNSNGSWGG 305
>AE014297-1715|AAN13574.1| 325|Drosophila melanogaster CG12749-PB,
isoform B protein.
Length = 325
Score = 29.1 bits (62), Expect = 5.0
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +2
Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGD--STNYGGRLD 364
GG + G GQ D G G G+ + + G G G GG+ GG
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264
Query: 365 WANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGG 490
W + N Q GG G G G + N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGYG-GGNSNGSWGG 305
>AE013599-2502|AAF57839.1| 300|Drosophila melanogaster CG4886-PA
protein.
Length = 300
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 224 NDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTN 346
N++G GK+ Y ++ FND+ L ++GT + G +TN
Sbjct: 204 NNNGTGGKSIYGKK-FNDENFNLKHNSFGTLSMANSGANTN 243
>AY865067-2|AAW79466.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 168 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 347
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 433 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 489
Query: 348 TVDVWTGPTRTHKLPLT*TDKS 413
T++V+T T +P + T+K+
Sbjct: 490 TINVFTTKKTTIMIPTSSTEKT 511
>AY865066-2|AAW79464.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 168 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 347
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 433 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 489
Query: 348 TVDVWTGPTRTHKLPLT*TDKS 413
T++V+T T +P + T+K+
Sbjct: 490 TINVFTTKKTTIMIPTSSTEKT 511
>AY865062-2|AAW79456.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 168 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 347
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 433 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 489
Query: 348 TVDVWTGPTRTHKLPLT*TDKS 413
T++V+T T +P + T+K+
Sbjct: 490 TINVFTTKKTTIMIPTSSTEKT 511
>AY864368-1|AAX38006.1| 575|Drosophila melanogaster scavenger
receptor protein.
Length = 575
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 168 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 347
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 376 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 432
Query: 348 TVDVWTGPTRTHKLPLT*TDKS 413
T++V+T T +P + T+K+
Sbjct: 433 TINVFTTKKTTIMIPTSSTEKT 454
>AY349704-1|AAQ75563.1| 601|Drosophila melanogaster Sr-CI protein.
Length = 601
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 168 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 347
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 432 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 488
Query: 348 TVDVWTGPTRTHKLPLT*TDKS 413
T++V+T T +P + T+K+
Sbjct: 489 TINVFTTKKTTIMIPTSSTEKT 510
>AY349701-1|AAQ75560.1| 601|Drosophila melanogaster Sr-CI protein.
Length = 601
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 168 TSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGS*DPEVTALT 347
T+ T+ R++ TT + KP TT + MT S T+ S P T T
Sbjct: 432 TTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPMTTTS-TTFTTSTTSTRPTTT--T 488
Query: 348 TVDVWTGPTRTHKLPLT*TDKS 413
T++V+T T +P + T+K+
Sbjct: 489 TINVFTTKKTTIMIPTSSTEKT 510
>AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p protein.
Length = 1711
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 507 NSFETIPPAEMWVFLSRSHTPE--PEAVIPDLPPICLFMSMA 388
N F +IP AE VF + P A PD PP LF S A
Sbjct: 1386 NIFGSIPKAETSVFGGATTAPSNTTAAATPDAPPAGLFASAA 1427
>AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA
protein.
Length = 1711
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 507 NSFETIPPAEMWVFLSRSHTPE--PEAVIPDLPPICLFMSMA 388
N F +IP AE VF + P A PD PP LF S A
Sbjct: 1386 NIFGSIPKAETSVFGGATTAPSNTTAAATPDAPPAGLFASAA 1427
>BT029280-1|ABK30917.1| 1191|Drosophila melanogaster IP14007p
protein.
Length = 1191
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 464 YQDPTHRSPRLSSQICLRFVCL 399
Y P HRS LS+Q + +VCL
Sbjct: 259 YPHPAHRSTALSTQAAMLYVCL 280
>AY095186-1|AAM12279.1| 932|Drosophila melanogaster LD21546p
protein.
Length = 932
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 488 RRLRCGCSYQDPTHRSPRLSSQICLRFVCLC 396
R LR G + ++ H+ S++ L+F+C+C
Sbjct: 156 RYLRLGANRREEVHKQLDASAECVLKFLCMC 186
>AY071704-1|AAL49326.1| 207|Drosophila melanogaster RH19892p
protein.
Length = 207
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 408 KSEADLG*QPRAPVCGILIRTPTSQP 485
K E + G QP+AP G+L+ P++ P
Sbjct: 83 KQEKESGRQPKAPAPGVLVMPPSTCP 108
>AY070957-1|AAL48579.1| 207|Drosophila melanogaster RE05806p
protein.
Length = 207
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 408 KSEADLG*QPRAPVCGILIRTPTSQP 485
K E + G QP+AP G+L+ P++ P
Sbjct: 83 KQEKESGRQPKAPAPGVLVMPPSTCP 108
>AJ459405-1|CAD30676.1| 207|Drosophila melanogaster PYM protein
protein.
Length = 207
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 408 KSEADLG*QPRAPVCGILIRTPTSQP 485
K E + G QP+AP G+L+ P++ P
Sbjct: 83 KQEKESGRQPKAPAPGVLVMPPSTCP 108
>AF293388-1|AAG00610.1| 207|Drosophila melanogaster WIBG protein.
Length = 207
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 408 KSEADLG*QPRAPVCGILIRTPTSQP 485
K E + G QP+AP G+L+ P++ P
Sbjct: 83 KQEKESGRQPKAPAPGVLVMPPSTCP 108
>AE014296-2642|AAF49534.1| 1191|Drosophila melanogaster CG12272-PA
protein.
Length = 1191
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 464 YQDPTHRSPRLSSQICLRFVCL 399
Y P HRS LS+Q + +VCL
Sbjct: 259 YPHPAHRSTALSTQAAMLYVCL 280
>AE014134-462|AAF51214.2| 932|Drosophila melanogaster CG2848-PA
protein.
Length = 932
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 488 RRLRCGCSYQDPTHRSPRLSSQICLRFVCLC 396
R LR G + ++ H+ S++ L+F+C+C
Sbjct: 156 RYLRLGANRREEVHKQLDASAECVLKFLCMC 186
>AE013599-3703|AAM68273.1| 207|Drosophila melanogaster CG30176-PA
protein.
Length = 207
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 408 KSEADLG*QPRAPVCGILIRTPTSQP 485
K E + G QP+AP G+L+ P++ P
Sbjct: 83 KQEKESGRQPKAPAPGVLVMPPSTCP 108
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,200,590
Number of Sequences: 53049
Number of extensions: 790255
Number of successful extensions: 1998
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1992
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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