Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n20f
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    29   3.4  
Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    28   6.0  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    28   6.0  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    28   6.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   6.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   6.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   6.0  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +2

Query: 218 GQNDDGLFG--KAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAA 391
           GQN   + G  + GY       D G    Q  G  V G GG S +YG +     +  Q  
Sbjct: 69  GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127

Query: 392 IDINRQIGGRSGMTASGS 445
              N    G SG  ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 26/86 (30%), Positives = 30/86 (34%)
 Frame = +2

Query: 191 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWA 370
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG  D  
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGD-G 221

Query: 371 NKNAQAAIDINRQIGGRSGMTASGSG 448
                         GG  GM   G G
Sbjct: 222 GYGPSGGYGGGYGPGGGYGMGGGGGG 247


>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 134 IRGLF-SKRHPRDVTWDTRMGGGKVFGTLGQNDD 232
           + GL+ + R  +D+  +T   G KVF   G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188


>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 263 LCCNRLYRIVHRRSVPKCRRPSLLPFSCPT 174
           LC N  Y++      PK R+ +L+P S PT
Sbjct: 86  LCTNMSYQLQKMVVFPKVRKEALMPTSSPT 115


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 317 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 207
           P C   GR+A+ GHH      L C   + R+V +++ PKC+
Sbjct: 36  PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 317 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 207
           P C   GR+A+ GHH      L C   + R+V +++ PKC+
Sbjct: 36  PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 317 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 207
           P C   GR+A+ GHH      L C   + R+V +++ PKC+
Sbjct: 36  PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 299 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 448
           Q +G    G  GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 299 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 448
           Q +G    G  GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 299 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 448
           Q +G    G  GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 181 VPRDVTGVSL*K*ASDGVFFFIIRRPVYFCVYTHQDCGDEKQQF 50
           +P  V G+SL   ++  +F   I  P+Y  VY + D  D+   F
Sbjct: 10  IPNTVAGISLFIFSAIYLFSLFIMFPIYVYVYRYNDKNDKMALF 53


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 251 RLYRIVHRRSVPKCRRPSLLPFSCPT*RHGGVALKI 144
           RLYR+    S+P+ + P  LP S      GGV L I
Sbjct: 844 RLYRLNELASMPEDQSPPALPLSFEHISRGGVYLMI 879


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,624
Number of Sequences: 27780
Number of extensions: 375694
Number of successful extensions: 945
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)