Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n19f
         (594 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT014913-1|AAT47764.1|  256|Drosophila melanogaster RH21963p pro...   338   2e-93
AY071342-1|AAL48964.1|  256|Drosophila melanogaster RE37829p pro...   338   2e-93
AF098520-1|AAF06828.1|  256|Drosophila melanogaster ribosomal pr...   338   2e-93
AE014296-477|AAF47660.1|  256|Drosophila melanogaster CG1263-PB,...   338   2e-93
AE014296-476|AAF47659.1|  256|Drosophila melanogaster CG1263-PA,...   338   2e-93
BT022891-1|AAY55307.1|  579|Drosophila melanogaster IP12501p pro...   262   3e-70
AY113486-1|AAM29491.1|  294|Drosophila melanogaster RE45450p pro...    43   3e-04
AE014296-1910|AAF50091.1|  294|Drosophila melanogaster CG7636-PA...    43   3e-04

>BT014913-1|AAT47764.1|  256|Drosophila melanogaster RH21963p
           protein.
          Length = 256

 Score =  338 bits (832), Expect = 2e-93
 Identities = 155/184 (84%), Positives = 171/184 (92%)
 Frame = +1

Query: 43  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
           VHFRDPY++K RKELFIAPEG++TGQFVYCG+KATL++GNVMP+  MPEGTI+CNLEEK 
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
           GDRGRLAR SGN+ATVI HN D K+TRVKLPSGAKKV+PS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180

Query: 583 KAGR 594
           KAGR
Sbjct: 181 KAGR 184


>AY071342-1|AAL48964.1|  256|Drosophila melanogaster RE37829p
           protein.
          Length = 256

 Score =  338 bits (832), Expect = 2e-93
 Identities = 155/184 (84%), Positives = 171/184 (92%)
 Frame = +1

Query: 43  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
           VHFRDPY++K RKELFIAPEG++TGQFVYCG+KATL++GNVMP+  MPEGTI+CNLEEK 
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
           GDRGRLAR SGN+ATVI HN D K+TRVKLPSGAKKV+PS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180

Query: 583 KAGR 594
           KAGR
Sbjct: 181 KAGR 184


>AF098520-1|AAF06828.1|  256|Drosophila melanogaster ribosomal
           protein L8 protein.
          Length = 256

 Score =  338 bits (832), Expect = 2e-93
 Identities = 155/184 (84%), Positives = 171/184 (92%)
 Frame = +1

Query: 43  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
           VHFRDPY++K RKELFIAPEG++TGQFVYCG+KATL++GNVMP+  MPEGTI+CNLEEK 
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
           GDRGRLAR SGN+ATVI HN D K+TRVKLPSGAKKV+PS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180

Query: 583 KAGR 594
           KAGR
Sbjct: 181 KAGR 184


>AE014296-477|AAF47660.1|  256|Drosophila melanogaster CG1263-PB,
           isoform B protein.
          Length = 256

 Score =  338 bits (832), Expect = 2e-93
 Identities = 155/184 (84%), Positives = 171/184 (92%)
 Frame = +1

Query: 43  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
           VHFRDPY++K RKELFIAPEG++TGQFVYCG+KATL++GNVMP+  MPEGTI+CNLEEK 
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
           GDRGRLAR SGN+ATVI HN D K+TRVKLPSGAKKV+PS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180

Query: 583 KAGR 594
           KAGR
Sbjct: 181 KAGR 184


>AE014296-476|AAF47659.1|  256|Drosophila melanogaster CG1263-PA,
           isoform A protein.
          Length = 256

 Score =  338 bits (832), Expect = 2e-93
 Identities = 155/184 (84%), Positives = 171/184 (92%)
 Frame = +1

Query: 43  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
           VHFRDPY++K RKELFIAPEG++TGQFVYCG+KATL++GNVMP+  MPEGTI+CNLEEK 
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
           GDRGRLAR SGN+ATVI HN D K+TRVKLPSGAKKV+PS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180

Query: 583 KAGR 594
           KAGR
Sbjct: 181 KAGR 184


>BT022891-1|AAY55307.1|  579|Drosophila melanogaster IP12501p
           protein.
          Length = 579

 Score =  262 bits (641), Expect = 3e-70
 Identities = 117/139 (84%), Positives = 130/139 (93%)
 Frame = +1

Query: 178 KDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVG 357
           KDIIHDPGRGAPLAVVHFRDPY++K RKELFIAPEG++TGQFVYCG+KATL++GNVMP+ 
Sbjct: 1   KDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLS 60

Query: 358 AMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 537
            MPEGTI+CNLEEK GDRGRLAR SGN+ATVI HN D K+TRVKLPSGAKKV+PS+NR M
Sbjct: 61  QMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAM 120

Query: 538 VGIVAGGGRIDKPILKAGR 594
           VGIVAGGGRIDKPILKAGR
Sbjct: 121 VGIVAGGGRIDKPILKAGR 139


>AY113486-1|AAM29491.1|  294|Drosophila melanogaster RE45450p
           protein.
          Length = 294

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 33/109 (30%), Positives = 54/109 (49%)
 Frame = +1

Query: 172 VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMP 351
           +V +++ D  R A +A+V   D  K+    E   A + L T +F+        E G+  P
Sbjct: 107 LVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPRIPVRPNE-GDAYP 165

Query: 352 VGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPS 498
           +GA+P GT +  LE+  G    L  A+G F T++      ++  V+LPS
Sbjct: 166 LGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTIL--RKFDEKVVVQLPS 212


>AE014296-1910|AAF50091.1|  294|Drosophila melanogaster CG7636-PA
           protein.
          Length = 294

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 33/109 (30%), Positives = 54/109 (49%)
 Frame = +1

Query: 172 VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMP 351
           +V +++ D  R A +A+V   D  K+    E   A + L T +F+        E G+  P
Sbjct: 107 LVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPRIPVRPNE-GDAYP 165

Query: 352 VGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPS 498
           +GA+P GT +  LE+  G    L  A+G F T++      ++  V+LPS
Sbjct: 166 LGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTIL--RKFDEKVVVQLPS 212


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,855,048
Number of Sequences: 53049
Number of extensions: 649218
Number of successful extensions: 1775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)