Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n18f
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    24   0.86 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   0.86 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.0  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    23   2.6  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    23   2.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.1  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   8.1  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 253 AVDKVDIYSASWGPNDDG 306
           A DK+  Y ASWG N  G
Sbjct: 19  ASDKIICYYASWGANRPG 36


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 464 HCCDTHQHVAGRCIPKSMEPCSLNLCEQ--ACEVQGESMWCSCYPGFQ 601
           H C       G+   +++  C +N CE    C  +  +  C C  G++
Sbjct: 52  HRCQCQPGFTGKYCHENINDCKVNPCENGGTCVDKINAFQCICKEGWE 99


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -3

Query: 501 HRPATCW-CVSQQCSLTHCTSASP 433
           H P   W C++Q+C   H   A P
Sbjct: 52  HPPQWTWQCINQRCERRHIKGAIP 75


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 253 AVDKVDIYSASWGPNDDG 306
           A DKV  Y ASWG    G
Sbjct: 21  ATDKVICYYASWGAQRPG 38


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 457 EAALLRYTPTRRW 495
           +AA +RY PT RW
Sbjct: 9   DAAPVRYGPTERW 21


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 457 EAALLRYTPTRRW 495
           +AA +RY PT RW
Sbjct: 9   DAAPVRYGPTERW 21


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 478 TPTRRWTVYSEINGAVQSEPV*ASMR 555
           TPT     +SE  G V SE V +S++
Sbjct: 9   TPTSSAPAFSEQRGGVISEGVASSLQ 34


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 426 HVCRDRNTRSVGHRAVLLSIRFD 358
           HVC++ +T  +G+   L+  RF+
Sbjct: 270 HVCQNVSTEVIGNILRLMHRRFE 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,748
Number of Sequences: 336
Number of extensions: 3732
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)