Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n18f
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0153 + 21299150-21299593,21299733-21299873,21299971-213000...    29   3.8  
08_01_0843 - 8276619-8278991                                           28   6.6  
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744...    27   8.7  
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...    27   8.7  
01_01_1079 - 8491955-8492755                                           27   8.7  

>03_05_0153 +
           21299150-21299593,21299733-21299873,21299971-21300084,
           21300181-21300354,21300486-21300494
          Length = 293

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 466 LLRYTPTRRWTVYSEINGAVQSEPV*ASMRSAGREY 573
           +LRY P   W+ Y E   A+++ PV A M  +G  Y
Sbjct: 155 ILRYMPEHNWSAYEE---ALKTNPVLAKMMISGVVY 187


>08_01_0843 - 8276619-8278991
          Length = 790

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +2

Query: 503 IPKSMEPCSLN-LC--EQACEV--QGESMWCSCYPGFQF 604
           +P S + CS+  +C     C+V   GE+  CSC PGF+F
Sbjct: 287 VPPSNDRCSVKGVCGPNSFCQVTSSGETS-CSCLPGFEF 324


>11_06_0527 +
           24672649-24672707,24673459-24673817,24674366-24674435,
           24674656-24674730,24674731-24674846,24674975-24675006,
           24675117-24675242,24675379-24675537,24675886-24675978,
           24676069-24676236,24676388-24676486,24676603-24676820,
           24676900-24676957,24677421-24677509,24677590-24677721,
           24678000-24678122,24678568-24678666,24678774-24678965,
           24679127-24679298,24679416-24679572,24679704-24679906,
           24680105-24680246,24680324-24680484,24680585-24680701,
           24680788-24680874
          Length = 1101

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 395 TDLVLRSRQTCRVGDADVQC---VRLHCCDTHQHVAGRCIP 508
           +D++L+  +TCR     + C      H  D +  V+G+C P
Sbjct: 145 SDVILQFERTCRNASESISCKDEYFYHSSDAYSLVSGQCHP 185


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 442 RRTMREAALLRYTPTRRWTVYSEINGAVQSE 534
           RRT R    LRY P  + T  S ING V +E
Sbjct: 766 RRTYRRMVFLRYEPNNQ-TYLSLINGYVSAE 795


>01_01_1079 - 8491955-8492755
          Length = 266

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = +2

Query: 419 QTCRVGDADVQCVRL---HCCDTHQHV 490
           QTCR     V+CV     HCCD H  V
Sbjct: 44  QTCRRDHYCVRCVHAFCSHCCDDHHFV 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,642
Number of Sequences: 37544
Number of extensions: 397723
Number of successful extensions: 989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)