Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n18f
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 50 1e-06
SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 50 2e-06
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 46 2e-05
SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 46 2e-05
SB_48222| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_3260| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 45 5e-05
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 39 0.004
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 38 0.006
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 33 0.24
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 31 0.96
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 29 2.9
SB_18409| Best HMM Match : DM (HMM E-Value=5.9) 29 2.9
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 29 3.9
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 28 5.1
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 28 5.1
SB_56227| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_25417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 5.1
SB_30640| Best HMM Match : EGF_CA (HMM E-Value=2.4e-09) 28 6.7
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0) 28 6.7
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 28 6.7
SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5) 28 6.7
SB_11923| Best HMM Match : Toxin_3 (HMM E-Value=0.32) 28 6.7
SB_58971| Best HMM Match : WSC (HMM E-Value=3.3) 27 8.9
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48) 27 8.9
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 27 8.9
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 27 8.9
SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 27 8.9
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +1
Query: 265 VDIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
+DIYS+SWGP+DDGRTV+GPG +A AF+ G++ R
Sbjct: 248 IDIYSSSWGPDDDGRTVDGPGPMAKRAFRDGIKKGR 283
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = -3
Query: 222 EISWDCNDRDSDPFPRYQKVMKNSHGTRCAGEVCS 118
E S+D N DSDPFPRY N HGTRCAGEV +
Sbjct: 172 EASYDYNHYDSDPFPRYSPDNINKHGTRCAGEVAA 206
>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 772
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/36 (55%), Positives = 22/36 (61%)
Frame = -3
Query: 225 PEISWDCNDRDSDPFPRYQKVMKNSHGTRCAGEVCS 118
PE SWD N D DP PR N HGTRCAGE+ +
Sbjct: 143 PEGSWDINSNDEDPMPRADDAGLNHHGTRCAGEIAA 178
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 268 DIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
DIYS SWGP+D+G+TV+GP LA A GV R
Sbjct: 221 DIYSCSWGPDDNGKTVDGPHQLAQAALAHGVLAGR 255
>SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 782
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 265 VDIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
VDIYSASWGP D+G+T+ GP L +A + GV+ R
Sbjct: 374 VDIYSASWGPKDNGKTLAGPSSLGRKALEHGVKRGR 409
>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1357
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 250 YAVDKVDIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
+A D+YS WGP DDG+T PG LA +A K G E R
Sbjct: 1135 FANQVTDVYSNCWGPKDDGKTFGKPGPLAAKALKSGAEKGR 1175
>SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1114
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3
Query: 225 PEISWDCNDRDSDPFPRYQKVMKNSHGTRCAGEV 124
P+ SWD ND+D DPFP N+HGT+C GEV
Sbjct: 602 PKASWDFNDKDDDPFPN-DVDPYNAHGTKCGGEV 634
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +1
Query: 229 LENN*K*YAVDKVDIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
LE N Y +DIYS WGP DDG+T PG L +A + G + R
Sbjct: 667 LEANALSYKPQYIDIYSNCWGPKDDGKTFGRPGKLGQKALEDGAKKGR 714
>SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 446
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3
Query: 225 PEISWDCNDRDSDPFPRYQKVMKNSHGTRCAGEV 124
P+ SWD ND+D DPFP N+HGT+C GEV
Sbjct: 221 PKASWDFNDKDDDPFPN-DVDPYNAHGTKCGGEV 253
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 229 LENN*K*YAVDKVDIYSASWGPNDDGR 309
LE N Y +DIYS WGP DDG+
Sbjct: 286 LEANALSYKPQYIDIYSNCWGPKDDGK 312
>SB_48222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 250 YAVDKVDIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
Y D +DIYS+ WGP DDG+ PG LA +A + G E R
Sbjct: 20 YRSDYIDIYSSCWGPKDDGKRFGKPGILASKALQIGAERVR 60
>SB_3260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -3
Query: 216 SWDCNDRDSDPFPRYQKVMKNSHGTRCAGEVCS 118
S+D N D+DP PRY +N HGTRCAGEV +
Sbjct: 5 SYDFNSNDADPAPRYTWNDENRHGTRCAGEVAA 37
>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1124
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 265 VDIYSASWGPNDDGRTVEGPGHLAMEAFKRGVETNR 372
+DIYS WGP DDG+T PG LA EA +G R
Sbjct: 562 IDIYSNCWGPKDDGKTFGKPGKLAQEALMQGALKGR 597
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 225 PEISWDCNDRDSDPFPRYQKVMKNS 151
P SWD ND D+DPFPRY +N+
Sbjct: 217 PNASWDVNDGDNDPFPRYDPTNENN 241
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 452 CVRLHCCDTHQ-HVAGRCIPKSMEPCSLNLC-EQACEVQGESMWCSCYPGF 598
C+ +C T H RC ++M+PC N C C + +S C C+ G+
Sbjct: 714 CIHGNCMVTLDGHRCARCSEQAMDPCESNPCVHGTCRPRNDSFTCQCFEGY 764
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 32.7 bits (71), Expect = 0.24
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +2
Query: 365 RIDSSTARCPTDLVLRSRQTCRVGDADVQC---VRLHCCDTHQ--HVAGRCIPKSMEPCS 529
R+D+ T +C D+ +R + GD + C V C HQ + G+ ++ CS
Sbjct: 550 RLDARTEQC-VDIDECARNHGK-GDCEHLCTNTVGSFSCSCHQGYRLKGKHQCVDVDECS 607
Query: 530 ---LNLCEQACEVQGESMWCSCYPGF 598
LN C+Q C S C+C PG+
Sbjct: 608 DNSLNRCQQTCNNSIGSFKCTCRPGY 633
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 515 MEPCSLNL--CEQACEVQGESMWCSCYPGF 598
++ CS NL C Q C S +C+C+PGF
Sbjct: 586 IDECSSNLHICNQTCNNVPGSYYCTCFPGF 615
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 MEPCSLNLCEQACEVQGESMWCSCYPGFQ 601
++ C+ +C C S CSC+PG+Q
Sbjct: 832 IDECATKVCSHNCTNTPGSYRCSCFPGYQ 860
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 506 PKSMEPCSLNL--CEQACEVQGESMWCSCYPGFQ 601
P + C++N C Q C + + CSC+PGF+
Sbjct: 3365 PSTNRTCAVNNGGCSQNCTERDSHVICSCWPGFE 3398
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = +2
Query: 359 SKRIDSSTARCPTDLVLRSRQTCRVGDADVQCVRLHCCDTHQHVAGRCIPKSMEPCSLNL 538
S +D C D S + + + V R+ C D G C ++ C N
Sbjct: 1117 SDEVDCGLESCGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPG-C---GLDQCHSNN 1172
Query: 539 --CEQACEVQGESMWCSCYPGF 598
C Q C E + CSC PGF
Sbjct: 1173 GGCAQLCMDVPEGVQCSCRPGF 1194
>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1494
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 543 SHRFRLHGSIDFGIHRPATCWCVSQQC---SLTHCTSASPTRHVCRDR 409
+ R+ LHG +H + +C S T CT+ S TR+ CR R
Sbjct: 777 NQRYTLHGVQQSALHATRCTTISATRCTTISATRCTTISTTRYTCRLR 824
>SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Frame = +2
Query: 389 CPTDLVLRSRQTCRVGDADVQCVRLHCCDTHQHVAGRCIPKSMEPCSLNLCEQA--CEVQ 562
C TD+ + C G + C G ++ C+ N C+ C
Sbjct: 201 CETDINECAGDPCANGGTCTDGINGFTCTCPAGYNGSTCDNDIDECASNPCQNGATCNDG 260
Query: 563 GESMWCSCYPGF 598
S CSC PGF
Sbjct: 261 VNSYTCSCKPGF 272
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 494 GRCIPKSMEPCSLNLCEQA--CEVQGESMWCSCY 589
G C PK+++PC + LC++ C + + C C+
Sbjct: 1565 GEC-PKAVDPCEITLCDKGKRCLLVNGTATCECF 1597
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 MEPCSLNLCEQACEVQGESMWCSCYPGFQ 601
++ C +CE+ C S +C C PG+Q
Sbjct: 747 IDECKQRMCEKECVNTEGSYFCFCPPGYQ 775
>SB_18409| Best HMM Match : DM (HMM E-Value=5.9)
Length = 190
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Frame = +2
Query: 320 DLVIWRWRHSREVSKRIDSSTARCPTDLVLRSRQTCRVGDADVQCVRLHCCDTHQHVAGR 499
D+V+ R R S A+C D+V+R+ + CR + + C D H R
Sbjct: 9 DVVMRTVRGCRYAHSAWMSLCAQC-VDVVMRTVRGCRYAHSAWMSLCAQCVDVVMHTVRR 67
Query: 500 CIPKSMEPCS------LNLCEQACEV 559
C M C ++LC Q +V
Sbjct: 68 CRYAHMRGCRYADSAWVSLCAQCVDV 93
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 458 RLHCCDTHQHVAGRCIPKSMEPCSL-NLCEQACEVQGESMWCSCYPGFQ 601
R C D ++ R + ++ C+L + CE C S +C+C GF+
Sbjct: 458 RCRCRDGYKLEPNRRTCQDLDECALFSGCEMLCHNTRGSYYCACSEGFK 506
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +2
Query: 470 CDTHQHVAGRCIPKSMEPCSLNLCEQACEVQGESMWCSC 586
C G C K + C N C+ C S CSC
Sbjct: 350 CKCRAGYEGTCCEKDVNECLRNPCQHTCTNTYGSYTCSC 388
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 539 CEQACEVQGESMWCSCYPGFQ 601
C+Q C S CSC PGFQ
Sbjct: 397 CQQKCNNDYGSYHCSCDPGFQ 417
>SB_56227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 338 WRHSREVSKRIDSSTARCPTDLVLRSRQTCRVGDADVQCVRLHCCDTH-QHV 490
WR RE KR + R PTD LR + C RL C H +HV
Sbjct: 487 WRADRECVKRFANVVLRGPTD--LRKTASALPEQTATACWRLMTCCIHCRHV 536
>SB_25417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 549 ACSHRFRLHGSIDFGIHRPATCW 481
AC+ + + FGIH ATCW
Sbjct: 390 ACARAAKFNNFNSFGIHNNATCW 412
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 374 SSTARCPTDLVLRSRQTCRVGDADVQCVRL-HCCDTHQHVAG----RCIPKSMEPCSLNL 538
S CP + V R+ + C+ ++ +C+R C D + G +C+ + +
Sbjct: 90 SGECECPANTVGRTCEPCQCNNSTDKCLRSGECRDCQHNTTGFYCDKCVTGTYGNATAQQ 149
Query: 539 CEQA-CEVQGES 571
C+ C V G S
Sbjct: 150 CKACDCNVNGSS 161
>SB_30640| Best HMM Match : EGF_CA (HMM E-Value=2.4e-09)
Length = 42
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 545 QACEVQGESMWCSCYPGFQ 601
+ CE S WC+C PG+Q
Sbjct: 16 KTCENTMGSYWCACQPGYQ 34
>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 651
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 533 NLCEQACEVQGESMWCSCYPGFQ 601
N C+Q C S CSCY G++
Sbjct: 235 NTCQQTCTNLPGSYRCSCYKGYE 257
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 527 SLNLCEQACEVQGESMWCSCYPGF 598
SLN C Q C S++C+C GF
Sbjct: 39 SLNPCSQRCVNTRGSLYCACSSGF 62
>SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5)
Length = 311
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 287 GDLMTTEEPLKDLVIWRWRHSREVSKRIDSSTARCPTDLVLRSRQTCRV 433
G M T+EP K+ I RW+H +S ++ A ++RS T ++
Sbjct: 91 GGKMGTDEPSKEPYISRWQHIHSLSFLKENCVASTNDHPMVRSYSTSQM 139
>SB_11923| Best HMM Match : Toxin_3 (HMM E-Value=0.32)
Length = 884
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Frame = +2
Query: 320 DLVIWRWRHSREVSKRIDSSTARCPTDLVLRSRQTCRV-------GDADVQCVRLHCC 472
D ++W SR + R S+ TD L + RV GDAD CV CC
Sbjct: 566 DCIVWA---SRNAAPRRSSAPTPASTDAGLSLTEIARVAAVDLSDGDADEDCVEESCC 620
>SB_58971| Best HMM Match : WSC (HMM E-Value=3.3)
Length = 146
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 422 TCRVGDADVQCVRLHCCDTHQHVAG-RCIPKSMEPCSLNLCEQACEV 559
T +V + V+C+ + +T+ V +C PC L LC+ C +
Sbjct: 103 TSKVSEPTVRCISM---ETNTAVDDEKCDKSKKPPCDLRLCQDVCNL 146
>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
Length = 369
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 386 RCPTDLVLRSRQTCRVGDADVQCVRLHCCDTHQHVAGRCIPKSMEPCSLNLCEQACEV 559
R D+V+R+ + CR + + C D H RC + ++LC Q +V
Sbjct: 169 RTCVDVVMRTVRGCRYAHSAWMSLCTQCVDVVMHTVRRC--RYAHSAWMSLCAQCVDV 224
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 503 IPKSMEPC-SLN-LCEQACEVQGESMWCSCYPGFQ 601
IP ++ C S N C Q C S +CSC+ G++
Sbjct: 621 IPPDIDECKSFNGHCLQLCTNTKTSFYCSCFSGYE 655
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Frame = +2
Query: 389 CPTDLVLRSRQTCRVGDADVQCVRLHCCDTHQHVAGRCIPKSMEPCSLNLC--EQACEVQ 562
C TD+ + C G V H C G+ +++ C+ C C Q
Sbjct: 1513 CETDIDECASSPCANGGTCTDLVDAHKCQCSTGYTGKNCEVNIDECATKPCLNGATCVDQ 1572
Query: 563 GESMWCSCYPGFQ 601
C C PG++
Sbjct: 1573 IAVYKCLCAPGYK 1585
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +2
Query: 470 CDTHQHVAGRCIPKSMEPCSLNLC--EQACEVQGESMWCSCYPGF 598
C G +S+ C+ N C E C S CSC PG+
Sbjct: 3684 CSCKPGFTGSQCEESVNDCNPNPCRNEGTCTDNNGSFKCSCIPGY 3728
>SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 284 RGDLMTTEEPLKDLVIWRWRHSREVSKRIDSSTARCPTDLVLRS 415
R D++T + ++ +RWRH V + ST R + L LRS
Sbjct: 111 RTDIVTRVQNNEETFWFRWRHLAAVRRAFVCSTVRESSPLDLRS 154
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 515 MEPCSLNLCEQACEVQGESMWCSCYPGF 598
+EP N C S+ CSC PGF
Sbjct: 11 LEPARTNRKGGTCSEGSNSLLCSCLPGF 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,401
Number of Sequences: 59808
Number of extensions: 468959
Number of successful extensions: 1251
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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