Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n18f
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.0  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 567 SPCTSHACSHRFRLHGSIDFGIHRPATCWCVSQQ 466
           +P T H   H  R   S+D   HR    W V ++
Sbjct: 77  NPETHHPIRHGRRQSRSMDLNAHREQMSWPVKKE 110


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 471 QQCSLTHCTSASPTRHVCRDRNTRSVGHRAVL 376
           Q C    C+ AS  RHV      R   +R V+
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVI 40


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 596  TQGSRNTTYSLP 561
            TQ SRN TYS P
Sbjct: 1297 TQPSRNNTYSTP 1308


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 275 TVPRGDLMTTEEPLKDLV 328
           +VP  DL+TTE+   ++V
Sbjct: 404 SVPANDLLTTEKDNNEIV 421


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 389 IALCCYLFVSTPLLNASIAK*PGPSTVLPSSLGPHEA 279
           +AL  Y  V+  L ++     P P    PSS GP  A
Sbjct: 320 MALMEYCLVNIVLGDSDTPPKPAPPPPPPSSSGPDSA 356


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 417 RDRNTRSVGHRAVLLSIRFDTSLECL 340
           R++  R  G  +V   +RF T+L C+
Sbjct: 137 RNKLVRLSGDGSVTYGMRFTTTLACM 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,680
Number of Sequences: 438
Number of extensions: 4448
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)