Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n16f
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 57 9e-09
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 57 9e-09
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 56 1e-08
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 56 1e-08
U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein ... 51 6e-07
U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein ... 51 6e-07
U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein ... 51 6e-07
AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or cys... 51 6e-07
AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or cys... 51 6e-07
AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or cys... 51 6e-07
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 50 1e-06
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 50 1e-06
U50301-8|AAB37049.1| 339|Caenorhabditis elegans Serpin protein ... 36 0.023
AY525086-1|AAS13534.1| 199|Caenorhabditis elegans serine or cys... 36 0.023
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z69716-3|CAA93529.1| 335|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL110500-3|CAB54483.1| 493|Caenorhabditis elegans Hypothetical ... 28 6.0
AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical ... 28 6.0
AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical ... 28 6.0
AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical ... 27 7.9
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 57.2 bits (132), Expect = 9e-09
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Frame = +3
Query: 168 LKESYNLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQ 347
LK L +V+ SPL + L L+L +GA +++E+ ++LGG E + L +
Sbjct: 13 LKLLATLPHSGSVVLSPLSISLGLALIHAGACGSTQKELEDVLGGSRIFEE---FSGLME 69
Query: 348 RYAEFDPKFLT-VANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFGDPKNAADIINRWA 521
+ D T + N+++V+ Y + + T L+++ ++++F + AA +N +
Sbjct: 70 AVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFV 129
Query: 522 DEQTQGHIKTPVSEDKIDPATA 587
+ T G IK + D + A A
Sbjct: 130 ENHTNGKIKDLIPADSANNAFA 151
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 57.2 bits (132), Expect = 9e-09
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Frame = +3
Query: 168 LKESYNLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQ 347
LK L +V+ SPL + L L+L +GA +++E+ ++LGG E + L +
Sbjct: 13 LKLLATLPHSGSVVLSPLSISLGLALIHAGACGSTQKELEDVLGGSRIFEE---FSGLME 69
Query: 348 RYAEFDPKFLT-VANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFGDPKNAADIINRWA 521
+ D T + N+++V+ Y + + T L+++ ++++F + AA +N +
Sbjct: 70 AVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFV 129
Query: 522 DEQTQGHIKTPVSEDKIDPATA 587
+ T G IK + D + A A
Sbjct: 130 ENHTNGKIKDLIPADSANNAFA 151
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Frame = +3
Query: 159 LKILKESYNLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQES--SHTY 332
L +L++ NL + + + SPL + L LSL A ++++EIR+ L G E H
Sbjct: 22 LSLLRQQ-NLTE--SFVFSPLSIALALSLVHVAAKGETRDEIRKALLNGATDEELEQHFS 78
Query: 333 GLLNQRYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADII 509
+ + VAN I+ + + + + L+ + +NF D + +A+ I
Sbjct: 79 NISAGLLVAEKGTEVNVANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEASAEAI 138
Query: 510 NRWADEQTQGHIKTPVSEDKIDPATAVAMFN 602
N + E T+GHIK ++ D I + N
Sbjct: 139 NNFVSENTKGHIKKIINPDSISEELVAVLTN 169
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Frame = +3
Query: 159 LKILKESYNLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQES--SHTY 332
L +L++ NL + + + SPL + L LSL A ++++EIR+ L G E H
Sbjct: 22 LSLLRQQ-NLTE--SFVFSPLSIALALSLVHVAAKGETRDEIRKALLNGATDEELEQHFS 78
Query: 333 GLLNQRYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADII 509
+ + VAN I+ + + + + L+ + +NF D + +A+ I
Sbjct: 79 NISAGLLVAEKGTEVNVANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEASAEAI 138
Query: 510 NRWADEQTQGHIKTPVSEDKIDPATAVAMFN 602
N + E T+GHIK ++ D I + N
Sbjct: 139 NNFVSENTKGHIKKIINPDSISEELVAVLTN 169
>U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform a protein.
Length = 366
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 213 SPLGVMLLLSLYESGAGAQSKEEIREIL--GGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
SPL + L LSL A +++++IRE L G + Q H + A + +A
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 387 NKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSE 563
N ++ +K+ ++ L+ + +++F + + A+ IN + E T HIK +
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKIIGS 147
Query: 564 DKIDPATAVAMFNVI 608
D I+ + N +
Sbjct: 148 DSINSDLVAVLTNAL 162
>U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform b protein.
Length = 366
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 213 SPLGVMLLLSLYESGAGAQSKEEIREIL--GGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
SPL + L LSL A +++++IRE L G + Q H + A + +A
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 387 NKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSE 563
N ++ +K+ ++ L+ + +++F + + A+ IN + E T HIK +
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKIIGS 147
Query: 564 DKIDPATAVAMFNVI 608
D I+ + N +
Sbjct: 148 DSINSDLVAVLTNAL 162
>U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein 7,
isoform c protein.
Length = 365
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 213 SPLGVMLLLSLYESGAGAQSKEEIREIL--GGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
SPL + L LSL A +++++IRE L G + Q H + A + +A
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 387 NKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSE 563
N ++ +K+ ++ L+ + +++F + + A+ IN + E T HIK +
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKIIGS 147
Query: 564 DKIDPATAVAMFNVI 608
D I+ + N +
Sbjct: 148 DSINSDLVAVLTNAL 162
>AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 365
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 213 SPLGVMLLLSLYESGAGAQSKEEIREIL--GGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
SPL + L LSL A +++++IRE L G + Q H + A + +A
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 387 NKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSE 563
N ++ +K+ ++ L+ + +++F + + A+ IN + E T HIK +
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKIIGS 147
Query: 564 DKIDPATAVAMFNVI 608
D I+ + N +
Sbjct: 148 DSINSDLVAVLTNAL 162
>AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 213 SPLGVMLLLSLYESGAGAQSKEEIREIL--GGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
SPL + L LSL A +++++IRE L G + Q H + A + +A
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 387 NKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSE 563
N ++ +K+ ++ L+ + +++F + + A+ IN + E T HIK +
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKIIGS 147
Query: 564 DKIDPATAVAMFNVI 608
D I+ + N +
Sbjct: 148 DSINSDLVAVLTNAL 162
>AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 213 SPLGVMLLLSLYESGAGAQSKEEIREIL--GGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
SPL + L LSL A +++++IRE L G + Q H + A + +A
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 387 NKIYVSDQYKLADAF-SRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSE 563
N ++ +K+ ++ L+ + +++F + + A+ IN + E T HIK +
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKIIGS 147
Query: 564 DKIDPATAVAMFNVI 608
D I+ + N +
Sbjct: 148 DSINSDLVAVLTNAL 162
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Frame = +3
Query: 195 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKF 374
+++++ SPL + L+LSL +G S+++IR L G E + + + K
Sbjct: 21 NESLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLVEHFSFVSKEVKNGTKG 80
Query: 375 LTV--ANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFGDPKNAADIINRWADEQTQGHI 545
+ V ANK+Y+ + + F TA + ++ +++ P A IN + + T G I
Sbjct: 81 VEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLTTPA-AVQEINSFVNTATNGKI 139
Query: 546 KTPVSEDKIDPATAVAMFNV 605
K ++D I A A+ + ++
Sbjct: 140 KNIATQDSIKDAIALLINSI 159
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Frame = +3
Query: 195 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKF 374
+++++ SPL + L+LSL +G S+++IR L G E + + + K
Sbjct: 21 NESLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLVEHFSFVSKEVKNGTKG 80
Query: 375 LTV--ANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFGDPKNAADIINRWADEQTQGHI 545
+ V ANK+Y+ + + F TA + ++ +++ P A IN + + T G I
Sbjct: 81 VEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLTTPA-AVQEINSFVNTATNGKI 139
Query: 546 KTPVSEDKIDPATAVAMFNV 605
K ++D I A A+ + ++
Sbjct: 140 KNIATQDSIKDAIALLINSI 159
>U50301-8|AAB37049.1| 339|Caenorhabditis elegans Serpin protein 8
protein.
Length = 339
Score = 35.9 bits (79), Expect = 0.023
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Frame = +3
Query: 168 LKESYNLADDKNVIASPLGVMLLL-SLYESGAGAQSKEEIREIL--GGGEAQESSHTYGL 338
LK + ++ + SP+ + L L SLYE+ G +++ +I + L + + +H +
Sbjct: 14 LKLLHQQDHSQSFVFSPIAISLALYSLYEAARG-ETRSQIHDCLFKNATDGEMVTHFSNV 72
Query: 339 LNQRYA-EFDPKFLTVANKIYVSDQYKLAD-AFSRTANLFRSEVDNINFGDPKNAADIIN 512
A + DP+ + + N I + K + L+ EV + + + K IN
Sbjct: 73 STALSAMKKDPQ-VKICNHIICRNGIKTESLCLDKVKLLYNCEVSSHDLDNEKETIKTIN 131
Query: 513 RWADEQTQGHIK---TPVSEDK 569
+ E T GHIK T +S DK
Sbjct: 132 KLIRENTDGHIKKINTKISIDK 153
>AY525086-1|AAS13534.1| 199|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 199
Score = 35.9 bits (79), Expect = 0.023
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Frame = +3
Query: 168 LKESYNLADDKNVIASPLGVMLLL-SLYESGAGAQSKEEIREIL--GGGEAQESSHTYGL 338
LK + ++ + SP+ + L L SLYE+ G +++ +I + L + + +H +
Sbjct: 13 LKLLHQQDHSQSFVFSPIAISLALYSLYEAARG-ETRSQIHDCLFKNATDGEMVTHFSNV 71
Query: 339 LNQRYA-EFDPKFLTVANKIYVSDQYKLAD-AFSRTANLFRSEVDNINFGDPKNAADIIN 512
A + DP+ + + N I + K + L+ EV + + + K IN
Sbjct: 72 STALSAMKKDPQ-VKICNHIICRNGIKTESLCLDKVKLLYNCEVSSHDLDNEKETIKTIN 130
Query: 513 RWADEQTQGHIK---TPVSEDK 569
+ E T GHIK T +S DK
Sbjct: 131 KLIRENTDGHIKKINTKISIDK 152
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
F43C1.1 protein.
Length = 1036
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +1
Query: 382 SPIKYTFPTSISWPTRSPGQRICSEAKWTT---LTLEIQRMPLISSTVGRTNRLKDT*RL 552
SP P+S P S + I T TL I R SSTV + +T L
Sbjct: 960 SPPPPPLPSSTPPPVSSEHEEINVRQSSTLSGGYTLSIDRFYSSSSTVSSRKQFNETRDL 1019
Query: 553 LSAKTKLTPP 582
LS KL+PP
Sbjct: 1020 LSKSLKLSPP 1029
>Z69716-3|CAA93529.1| 335|Caenorhabditis elegans Hypothetical
protein C04B4.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 3.4
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 9/175 (5%)
Frame = +3
Query: 54 RLLLLVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKESYNLADDKNVIASPLGVML 233
+LLL V + G + + H + I KES +L D +S +G +
Sbjct: 137 QLLLSVLVYTGARHIDIIAHSMGVSIARAIIQGGKFTSEKESCDLGSD---FSSLIGTFI 193
Query: 234 LLSLYESG-----AG----AQSKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVA 386
+S G AG A KE IR+I ES ++ L +Y+ KFLT
Sbjct: 194 AISSANYGMCSCEAGTAFPACDKEVIRKINPLENQLESKKSF--LQTKYS----KFLTKL 247
Query: 387 NKIYVSDQYKLADAFSRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKT 551
NK++ + +A +S+ +F N+ +G + N W + H++T
Sbjct: 248 NKVHKKEAEFIASIWSKDDEVFLK--GNLVWGKQTSLVPGSNIWKEYPQLTHMET 300
>AL110500-3|CAB54483.1| 493|Caenorhabditis elegans Hypothetical
protein Y87G2A.3 protein.
Length = 493
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/100 (19%), Positives = 41/100 (41%)
Frame = +3
Query: 300 GGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANLFRSEVDNINF 479
GG + + G+ + DP + + + Y D+ + T ++ S ++ +
Sbjct: 304 GGRPNHALYFVGMSGSKLFYLDPHYCRPKTES-TAKMYAEKDSTATTDDVGFSHLEEL-V 361
Query: 480 GDPKNAADIINRWADEQTQGHIKTPVSEDKIDPATAVAMF 599
P AD+ + D + + + +DP+ A+AMF
Sbjct: 362 PLPSQTADVYTKMDDSTYHCQMMLWIEYENVDPSLALAMF 401
>AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical
protein C01B4.9 protein.
Length = 571
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = -3
Query: 592 ATAVAGSILSSLTGVFMCP*VCSSAQRLMISAAFFGSPKLMLSTSLLNRFAVLENASANL 413
+T+VAG+++S LTG + +S+ FG + ++ S+L A L + A+
Sbjct: 80 STSVAGAVISILTGCYYLAGPLASS-----FVNVFGIRSVAIAGSILATTAFLLSRFAST 134
Query: 412 YWSETYILLATVKNFG 365
W E Y+L + G
Sbjct: 135 IW-ELYLLFGVLGGIG 149
>AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical
protein Y19D10A.12 protein.
Length = 544
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = -3
Query: 592 ATAVAGSILSSLTGVFMCP*VCSSAQRLMISAAFFGSPKLMLSTSLLNRFAVLENASANL 413
+T+VAG+++S LTG + +S+ FG + ++ S+L A L + A+
Sbjct: 80 STSVAGAVISILTGCYYLAGPLASS-----FVNVFGIRSVAIAGSILATTAFLLSRFAST 134
Query: 412 YWSETYILLATVKNFG 365
W E Y+L + G
Sbjct: 135 IW-ELYLLFGVLGGIG 149
>AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical
protein T28F2.4a protein.
Length = 748
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 42 TVMDRLLLLVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKESYNLADDKNVIASPL 221
T D+ LV + FG+ FS RLG+ ++K L+ + N+A KN + + L
Sbjct: 319 TFFDKFYQSNVLVVRRKQPTYFGNLFSTARLGELLEKNHLE-YGRNINIAQYKNGVRTTL 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,985
Number of Sequences: 27780
Number of extensions: 312114
Number of successful extensions: 798
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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