Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n14r
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81039-3|CAB02775.1|  325|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z50794-1|CAA90656.2|  179|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF303254-1|AAG50212.1|  179|Caenorhabditis elegans XL153 protein.      28   7.9  

>Z81039-3|CAB02775.1|  325|Caenorhabditis elegans Hypothetical
           protein C25D7.4 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 185 LTSLCLNILEIKAKNVCIT---CEEISCFLLVLNTNSVAVLYVNNIYDLPVFMENY 27
           LT L   +  I  K +  T   CEE+   L +LN N++  + +N  +   + +ENY
Sbjct: 151 LTELMRRVEPINTKTISFTRMHCEEMKSILSLLNANNIEKIELN--FHHGILLENY 204


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 FNKLYYKHLKIMHHTHSTLQTTIFQRDHTIMVVQAFHLNA*TNNI 337
           F+KL   H K + H  S L+  I   DH  +V++   L +  N++
Sbjct: 616 FSKLSTLHFKTLLHHESCLRMRISDVDHNSLVIETERLQSEKNDL 660


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 FNKLYYKHLKIMHHTHSTLQTTIFQRDHTIMVVQAFHLNA*TNNI 337
           F+KL   H K + H  S L+  I   DH  +V++   L +  N++
Sbjct: 616 FSKLSTLHFKTLLHHESCLRMRISDVDHNSLVIETERLQSEKNDL 660


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 700 IYRCILKYAYVTAMMLAIKY-VIDCFLTNIRFA*YHINPYAVFKEIIKLIRNSY 542
           +++ I KY  V+ +     + +I CFL N+R A +H+    +F  +  +I  +Y
Sbjct: 99  LFQYISKYCSVSIVSHYFHFFLISCFLANLRLALFHL--VLIFATVAYIIAGAY 150


>Z50794-1|CAA90656.2|  179|Caenorhabditis elegans Hypothetical
           protein F59F5.2 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 383 EYSELSLLLFLKPQVVILSTNIYHNTRI*ILLYYFSSSVNCD**S*DKSMLDIIAISN*F 562
           E  E SL  F KP VV  S+ I H     ILLY  +S    D  +   S    I+IS  +
Sbjct: 55  EEQESSLDHFKKPNVVFNSSEISHILLPLILLYRSTSEKTKDPITEMSSQFGTISISKFY 114

Query: 563 YN 568
           +N
Sbjct: 115 HN 116


>AF303254-1|AAG50212.1|  179|Caenorhabditis elegans XL153 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 383 EYSELSLLLFLKPQVVILSTNIYHNTRI*ILLYYFSSSVNCD**S*DKSMLDIIAISN*F 562
           E  E SL  F KP VV  S+ I H     ILLY  +S    D  +   S    I+IS  +
Sbjct: 55  EEQESSLDHFKKPNVVFNSSEISHILLPLILLYRSTSEKTKDPITEMSSQFGTISISKFY 114

Query: 563 YN 568
           +N
Sbjct: 115 HN 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,426
Number of Sequences: 27780
Number of extensions: 277621
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)