Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n14f
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 30 0.30
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 29 0.52
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.69
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.2
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 28 1.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.6
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 27 1.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.1
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 27 2.1
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 2.8
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 2.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 26 4.8
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.4
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 25 8.5
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 8.5
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 25 8.5
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 8.5
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 285 REELNKAIADYLGSNGYNDALEAFKKEADMTGEMD 389
R LN+ +ADY+ +NGY+ A K++ + +D
Sbjct: 117 RVRLNRLVADYMMANGYHGAAALLCKDSQLENLVD 151
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 29.1 bits (62), Expect = 0.52
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 273 SQRQREELNKAIADYLGSNGYNDALEAFKKEAD-MTGEMDRKFG 401
++ + E +KAI D NG ++ LEA K +AD T DR+ G
Sbjct: 88 NEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERG 131
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 28.7 bits (61), Expect = 0.69
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 411 EKKWTSVIRLQKKVMELESKLSEAQKEFIEGAPTRAKRTPTEWIP 545
++ WTS + +K ES + ++ ++ P + P++W P
Sbjct: 85 DQSWTSRVTSKKNEAGTESGDASVRRIYVTSIPEEHRHLPSQWFP 129
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 252 TTMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSV 431
TT QR+ E+LN++ D+LGS N++ +F K + + R+ L+E S
Sbjct: 997 TTENANAQQRKLEDLNRSFEDFLGSRPTNNS--SFLKNVSVDEDTARE--KLMEYDSLSW 1052
Query: 432 IRLQKKVME 458
I K++ E
Sbjct: 1053 ISNIKRIRE 1061
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 438 LQKKVMELESKLSEAQKEFIEGAPTRAKRTPTEWIPRPPEK 560
LQKKV+ + K I+G P + PT W P PP +
Sbjct: 18 LQKKVL-----IDAFNKVTIDGKPNVQHQQPTYWYPPPPPR 53
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.6
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Frame = +3
Query: 234 RLKHQPTTMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLE 413
R K + K L + EE + A+ L ALEA ++E +++ E
Sbjct: 592 REKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQE 651
Query: 414 KKWTSVIRLQK----KVMELESKLSEAQKEFIEGAPTRAKRTPTE 536
KK + R ++ K E E KL + Q+E R +R E
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREE 696
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 186 PA*TSKTLEQ*TSRASRLKHQPTTMKMVLSQRQREELNKAIAD 314
P+ T KT+ + S +H P K++ R E++KA+A+
Sbjct: 43 PSGTGKTISLLSLIVSYQQHYPEHRKLIYCSRTMSEIDKALAE 85
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 237 LKHQPTTMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEK 416
L+ P L++ Q+E + ++ YND + A K + R FG L++
Sbjct: 277 LRPPPQAEARRLAESQKEVFIGVVPSLRRNHLYNDLISAQIKSFSFLAYLLRSFGAALKQ 336
Query: 417 KWTSV-IRLQKKVMELESKLSEAQKEFI 497
+S+ I + M+ S+L + ++E +
Sbjct: 337 FESSIPICTLQLFMDCPSELYQTRRELL 364
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +3
Query: 318 LGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQKKVMELESKLSEAQKEFI 497
LGS+ ++ L + + D + GG+ + S +R K+ ++L +EF+
Sbjct: 515 LGSSNVDECLRGYLTKYDCSSADINPIGGISKTDLKSFLRYAKEALDL-----PILQEFL 569
Query: 498 EGAPTRAKRTPTE 536
+ PT TE
Sbjct: 570 DATPTAELEPTTE 582
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 282 QREELNKAIADYLGSNGYNDALEAFKKEADMTG 380
Q ++LN+ + DYL GY+ + EA +G
Sbjct: 8 QPQDLNRIVLDYLAKKGYSRTEAMLRLEASGSG 40
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 324 SNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQKKVMELESKLSEAQKE 491
S Y +E + E + T K LL+ KW + L+ ++ + + LSE E
Sbjct: 114 STSYQKEIEEVRNEKEAT---QVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHE 166
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = -1
Query: 241 LRRLAREVHCSRV-LLVHAGDGGNSVAIITQNTKNHLLLHYSLILFDLTHTVNALHTRLE 65
LR+ ++ CS LLV G GG + + H LL ++ +N + L
Sbjct: 150 LRKKRTKIQCSHFDLLVKLGQGGYGSVWLAKKRNTHELLAMKMMKKSTLQQLNEVKHILN 209
Query: 64 AENRFRCTQMQWFSSKSY 11
+ T +W Y
Sbjct: 210 ERDILTNTNSEWLVKLYY 227
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 357 KKEADMTGEMDRKFGGLLEKKWTSVIRLQKKVMELESKLSEAQKE 491
K D E +R+F LEKK RLQ+K+ L+ + + +++
Sbjct: 92 KSMVDDLRERERQFYDSLEKKENERDRLQEKLRALQEESANLRRQ 136
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 414 KKWTSVIRLQKKVMELESKLSEAQ 485
KKW VIR + +L ++S+AQ
Sbjct: 7 KKWEIVIRFASSIPDLSLEISDAQ 30
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 407 EATELAI-HLAGHVGFFLERFQRVIVTVTA*IIGNRFVQLLSL 282
+A+ LA+ H GHV F+ +F+ ++ + + + V +LSL
Sbjct: 63 DASVLAVAHSTGHVSFYRHQFRAELMFLRGIKVADSSVLMLSL 105
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 219 TSRASRLKHQPTTMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEAD 371
T+ K KM++S +QR+ +K + + YN+AL K++ +
Sbjct: 548 TAEEKEEKEAKELSKMMMSNKQRKLYSKLKNENSKNENYNNALRNRKRDIE 598
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 348 PARHC-NRYCLDNRQSLCSAPL 286
P+ H R CL +R S+CS PL
Sbjct: 76 PSHHIFTRKCLVSRASICSTPL 97
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 276 QRQREELNKAIADYLGS-NGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQKKV 452
Q +R++L +YL + N+A + +K + T + F LLEK+ ++++
Sbjct: 32 QEERKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEI 91
Query: 453 MELESKLSEAQK 488
+ KL K
Sbjct: 92 FSFQEKLDAMLK 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,902
Number of Sequences: 5004
Number of extensions: 40878
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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