Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n14f
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468... 31 0.93
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 29 2.2
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 3.8
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 28 5.0
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 28 6.6
06_02_0106 - 11898493-11901471 28 6.6
03_02_0536 - 9284079-9286034 28 6.6
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 27 8.7
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199... 27 8.7
>10_08_0305 -
16644276-16644290,16644611-16645258,16646764-16646865,
16646980-16647111,16647574-16648242
Length = 521
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 285 REELNKAIADYLGSNGYNDALEAFKKEADM---TGEMDRKFGGLLEKKWTSVIRLQKKVM 455
REEL + IA L S GY A A + E+ M E DR ++ +W + + + V
Sbjct: 25 REELVRVIAQSLYSLGYRRAAAALEAESGMPLYPAEHDRLLFDVMSGRWDACVAAIRAVA 84
Query: 456 ELESKLSEAQKEFI 497
L + A EF+
Sbjct: 85 GLGDR-ERAAAEFL 97
>05_04_0367 - 20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 29.5 bits (63), Expect = 2.2
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Frame = +3
Query: 267 VLSQRQREELNKAI-ADYLGSNGYNDALEAFKKEADMTG--EMDR------KFGGLLEKK 419
+L +RQ EE + + ADYL S Y L++F+KE + G E D+ + ++ +
Sbjct: 747 MLRERQDEEQQQKLKADYL-SRDYAKRLKSFQKEHGLAGHHEADKTVLPVAENNRAVDSR 805
Query: 420 WTSVIRLQKKVMELESKLSEAQKEFIEGAPTRAK 521
++ L K++ E S+ EA + E + T K
Sbjct: 806 IVALDALHKRLDEQRSRHEEAVNQIQESSATDLK 839
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 339 DALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQKKVMELESKLSEAQKEFIEGAPTRA 518
D+ + + + E D+K ++K SV +QKK E +S S++ E E PT+A
Sbjct: 180 DSSSSDSSSDEESDEDDKKTAAPVKKP--SVAAIQKKTQESDSSDSDSDSESDEDVPTKA 237
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 187 GDGGNSVAIITQNTKNHLLLHYSLILFDLTHTVNALHTRLEAENRF 50
G GG VA++ K L+ + +LF T N L R E+E R+
Sbjct: 31 GGGGEVVAVVRLRAKRALVGAGARVLFYPTLLYNVLRNRFESEFRW 76
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/86 (20%), Positives = 41/86 (47%)
Frame = +3
Query: 246 QPTTMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWT 425
QP+ K + ++Q +E K D D L+A +KEA + E ++ + E+K
Sbjct: 136 QPSAKKRPMGRKQAKEKMKNGEDGPYKEAMKDLLDAKEKEAKVKEERWKETKEIQERKLL 195
Query: 426 SVIRLQKKVMELESKLSEAQKEFIEG 503
++ V+ + ++++ ++ + G
Sbjct: 196 FAEHVRTYVLAMRTQIAASKVAALNG 221
>06_02_0106 - 11898493-11901471
Length = 992
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 244 CLRRLAREVHCSRVLLVHAGDGGNSVAIITQNTKN 140
CLR L +EVHC V H G+ G A++ K+
Sbjct: 157 CLR-LGKEVHCRVVRTGHGGNVGVQTALLDMYAKS 190
>03_02_0536 - 9284079-9286034
Length = 651
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 333 YNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQK--KVMELESKLSEAQKEFIEGA 506
Y + ++AF+ A ++D K T V R + +V + KL E +EF+
Sbjct: 298 YAECVKAFEAYASAAKQIDELCAFYGWCKETGVARSSEYPEVQRVTDKLLETLEEFMRDR 357
Query: 507 PTRAKRTPTEWIPRP 551
R K P E P P
Sbjct: 358 AKRPKSPPREPEPEP 372
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 360 KEADMTGEMDRKFGGLLEKKWTSVIRLQKKVMELESKLSEAQKEFIEGAPTRAKR 524
K++ + E D + K ++ RLQK++ E E + QKE E AP AK+
Sbjct: 590 KKSGRSSESDLSTAAERDTKDLTLPRLQKQISESELIELKMQKERQEKAPLGAKK 644
>01_01_0241 +
1992553-1993231,1993820-1993918,1994611-1994649,
1994806-1995857
Length = 622
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 411 EKKWTSVIRLQKKVMELESKLSEAQKEFIEGAPTRAKRTPTEWIPR 548
+K+ S++ LQK V ESK+ EA KE+ AP R + + I R
Sbjct: 293 QKEKGSLLTLQKYVAN-ESKIEEALKEYDSLAPKRYNYSELKKITR 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,126
Number of Sequences: 37544
Number of extensions: 294908
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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