Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n14f
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...   138   3e-33
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.     138   3e-33
AF125953-1|AAD14702.2|  397|Caenorhabditis elegans Temporarily a...    31   0.83 
Z92808-4|CAD54148.1|  928|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81476-15|CAD54124.1|  928|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z83108-6|CAB05512.1|  833|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z50070-13|CAA90402.1|  833|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U21309-1|AAN73881.2|  458|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L23651-13|AAA27957.3|  251|Caenorhabditis elegans Hypothetical p...    27   7.7  
AC024777-3|AAF60562.3|  563|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
           protein T03F6.5 protein.
          Length = 404

 Score =  138 bits (334), Expect = 3e-33
 Identities = 62/112 (55%), Positives = 85/112 (75%)
 Frame = +3

Query: 264 MVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQ 443
           M LS+RQ+EE+N+AIA+Y+ +NGY+++   F KE+ ++    +  GG+LEKKWT+V+RLQ
Sbjct: 1   MSLSERQKEEINRAIAEYMQNNGYSESFSVFLKESSLSENDIKPLGGILEKKWTTVLRLQ 60

Query: 444 KKVMELESKLSEAQKEFIEGAPTRAKRTPTEWIPRPPEKFCLTGHRATITKV 599
           +KV +LESKL E+Q+E   GAPTR KR   +WIPRPPE   LTGHR  IT+V
Sbjct: 61  RKVNDLESKLQESQREINHGAPTRDKRQAADWIPRPPETQKLTGHRLPITRV 112


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score =  138 bits (334), Expect = 3e-33
 Identities = 62/112 (55%), Positives = 85/112 (75%)
 Frame = +3

Query: 264 MVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRLQ 443
           M LS+RQ+EE+N+AIA+Y+ +NGY+++   F KE+ ++    +  GG+LEKKWT+V+RLQ
Sbjct: 1   MSLSERQKEEINRAIAEYMQNNGYSESFSVFLKESSLSENDIKPLGGILEKKWTTVLRLQ 60

Query: 444 KKVMELESKLSEAQKEFIEGAPTRAKRTPTEWIPRPPEKFCLTGHRATITKV 599
           +KV +LESKL E+Q+E   GAPTR KR   +WIPRPPE   LTGHR  IT+V
Sbjct: 61  RKVNDLESKLQESQREINHGAPTRDKRQAADWIPRPPETQKLTGHRLPITRV 112


>AF125953-1|AAD14702.2|  397|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 304 protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 285 REELNKAIADYLGSNGYNDALEAFKKEADM 374
           REEL + + D+   +GY++ +E F KE ++
Sbjct: 170 REELQQLVIDHFLHHGYSEVIETFSKEVNI 199


>Z92808-4|CAD54148.1|  928|Caenorhabditis elegans Hypothetical
           protein M04C3.1b protein.
          Length = 928

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 TMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTS 428
           TMK+VL+ RQ+E +N       G    N+ + A+  E +  GE    F  LLE+K+ S
Sbjct: 453 TMKIVLNTRQKEFMNSMAQCETGPT--NERIAAYGMEENEIGEAIIAF--LLEQKYNS 506


>Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 TMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTS 428
           TMK+VL+ RQ+E +N       G    N+ + A+  E +  GE    F  LLE+K+ S
Sbjct: 453 TMKIVLNTRQKEFMNSMAQCETGPT--NERIAAYGMEENEIGEAIIAF--LLEQKYNS 506


>Z81476-15|CAD54124.1|  928|Caenorhabditis elegans Hypothetical
           protein M04C3.1b protein.
          Length = 928

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 TMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTS 428
           TMK+VL+ RQ+E +N       G    N+ + A+  E +  GE    F  LLE+K+ S
Sbjct: 453 TMKIVLNTRQKEFMNSMAQCETGPT--NERIAAYGMEENEIGEAIIAF--LLEQKYNS 506


>Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 TMKMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTS 428
           TMK+VL+ RQ+E +N       G    N+ + A+  E +  GE    F  LLE+K+ S
Sbjct: 453 TMKIVLNTRQKEFMNSMAQCETGPT--NERIAAYGMEENEIGEAIIAF--LLEQKYNS 506


>Z83108-6|CAB05512.1|  833|Caenorhabditis elegans Hypothetical
           protein F43G6.9 protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 420 WTSVIRLQKKVMELESKLSEAQKEFIE 500
           WT+  +L++   E + K SE+QK+++E
Sbjct: 485 WTAETKLEEATKEKKEKSSESQKDYLE 511


>Z50070-13|CAA90402.1|  833|Caenorhabditis elegans Hypothetical
           protein F43G6.9 protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 420 WTSVIRLQKKVMELESKLSEAQKEFIE 500
           WT+  +L++   E + K SE+QK+++E
Sbjct: 485 WTAETKLEEATKEKKEKSSESQKDYLE 511


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = +3

Query: 261 KMVLSQRQREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKKWTSVIRL 440
           +++  ++Q E LN A  D    N Y   LE  KK+   T  M  K    + KK    I  
Sbjct: 7   QLISIRKQLENLNNATDDI---NSYEMKLETVKKQFCETQLMFNKEMLGIPKKLAKHISK 63

Query: 441 QKKVMELESKLSEAQKEFIEGAPTRAKRTPT 533
            ++  +L+S+ SE ++  ++ A  + +R  T
Sbjct: 64  SRQFFDLKSRESEIRR-CVQQAAAQFERQKT 93


>U21309-1|AAN73881.2|  458|Caenorhabditis elegans Hypothetical
           protein C13B9.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 300 KAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLL-EKKWTSVIRLQKKVMELES 467
           +A A+YL S+GYN  +       +   E+ +KF  ++ EK  TS   L+   + +E+
Sbjct: 281 RAAAEYLTSSGYNSTIVTSSLSGN-AAEIGKKFAEIITEKSITSSHLLKNSNLTIEN 336


>L23651-13|AAA27957.3|  251|Caenorhabditis elegans Hypothetical
           protein C29E4.8 protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 282 QREELNKAIADYLGSNGYNDALEAFKKEADMTGEMDRKFGGLLEKK 419
           Q  ++   + DY   +G + A++A K   D+   +D+ F    +KK
Sbjct: 200 QYHQMTVPLVDYYKKHGVHVAVDAAKPMTDVKAHIDQVFAKFTQKK 245


>AC024777-3|AAF60562.3|  563|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.3 protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +3

Query: 366 ADMTGEMDRKFGGLLEKKWTSVIRLQKKVMELESKLSEAQKEFIEGAPTRAKRTPTEWIP 545
           +D+ G       G  +K    + +L  K   +    S  + EF E      +R P   IP
Sbjct: 50  SDLAGMFVSNVKGFFDKAKRGIQKLDAK-KSIADLASNVETEFTETTEKLVERAPLPRIP 108

Query: 546 RP-PEKFCLTGHRATITK 596
           +P P    L G R + T+
Sbjct: 109 KPLPPDEILPGTRRSKTR 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,030
Number of Sequences: 27780
Number of extensions: 242875
Number of successful extensions: 685
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)